View conserved binding sites


Gene
VV05G14270
Description
name=GSVIVG01038278001;
Alias
GSVIVG01038278001;GSVIVT01038278001;GSVIVG01038278001
Binding siteNameDescriptionLocationPosition
Matrix_105SPL14Not availableUpstream-107
Matrix_161MYBC1;AT3G10760;LUX;AT5G05090;AT5G59570Not availableUpstream-88
Matrix_171LBD3;LBD4Not availableUpstream-105
Matrix_195GATA2;GATA4Not availableUpstream-88
Matrix_210ARR1Not availableUpstream-87
Matrix_283GATA15;GATA17;AT4G16141;GATA22;GATA23;GATA16;GNCNot availableUpstream-76
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-108
Matrix_452MYB46Not availableUpstream-349
Matrix_482AT2G25650;AT4G00270Not availableUpstream-102
Matrix_505GATA8Not availableUpstream-87
Matrix_59AT4G00238;AT4G00250Not availableUpstream-105
Matrix_63ARR10Not availableUpstream-86
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACDownstream4508
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Intron2794
Intron3052
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-104
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-121
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream4551
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionUpstream-949
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream4559
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-76
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-58
Downstream4498
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream4550
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-124