View conserved binding sites


Gene
VV05G09840
Description
name=GSVIVG01029085001;
Alias
GSVIVG01029085001;GSVIVG01029085001;GSVIVT01029085001
Binding siteNameDescriptionLocationPosition
Matrix_204WOX13Not availableIntron18235
Matrix_224ERF1Not availableUpstream-349
Matrix_243RAP2.12;RAP2.2Not availableUpstream-349
Matrix_287ERF2Not availableUpstream-348
Upstream-349
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-349
Matrix_334AT3G23230Not availableUpstream-349
Upstream-350
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-366
Matrix_344ATERF15;AT4G18450Not availableUpstream-350
Matrix_374AT5G07580;AT5G61590Not availableUpstream-349
Matrix_405DREB2CNot availableUpstream-347
Matrix_426CRF1;CRF2Not availableUpstream-349
Upstream-350
Matrix_430TOE2Not availableIntron18231
Matrix_438AtbZIP63Not availableUpstream-327
Matrix_467RAV1Not availableUpstream-366
Matrix_477RAV1Not availableUpstream-366
Matrix_482AT2G25650;AT4G00270Not availableUpstream-348
Matrix_484ATERF13Not availableUpstream-350
Upstream-351
Matrix_50ATERF14;AT5G43410Not availableUpstream-349
Upstream-350
Matrix_506DRNL;ATERF-4Not availableUpstream-349
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-496
Upstream-674
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroIntron18252
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisIntron18250
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesIntron18252
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesIntron18251
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron18222
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-351
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationIntron18253
Motif_419MYB4 binding site motifNot availableIntron18252
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisIntron18252
Intron14438
Intron14434
Intron11049
Intron9570
Intron7305
Intron5817
Intron2469
Intron1765
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-369
Upstream-545
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-874
Upstream-1178
Motif_517LEAFYATAGTarget sequence of LEAFY in the intron of AGAMOUS gene in ArabidopsisUpstream-973
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisIntron18254
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesIntron18253
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-448