Matrix_204 | WOX13 | Not available | Intron | 18235 |
Matrix_224 | ERF1 | Not available | Upstream | -349 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -349 |
Matrix_287 | ERF2 | Not available | Upstream | -348 |
| | | Upstream | -349 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -349 |
Matrix_334 | AT3G23230 | Not available | Upstream | -349 |
| | | Upstream | -350 |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -366 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -350 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -349 |
Matrix_405 | DREB2C | Not available | Upstream | -347 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -349 |
| | | Upstream | -350 |
Matrix_430 | TOE2 | Not available | Intron | 18231 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -327 |
Matrix_467 | RAV1 | Not available | Upstream | -366 |
Matrix_477 | RAV1 | Not available | Upstream | -366 |
Matrix_482 | AT2G25650;AT4G00270 | Not available | Upstream | -348 |
Matrix_484 | ATERF13 | Not available | Upstream | -350 |
| | | Upstream | -351 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -349 |
| | | Upstream | -350 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -349 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -496 |
| | | Upstream | -674 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Intron | 18252 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Intron | 18250 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Intron | 18252 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Intron | 18251 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Intron | 18222 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -351 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Intron | 18253 |
Motif_419 | MYB4 binding site motif | Not available | Intron | 18252 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Intron | 18252 |
| | | Intron | 14438 |
| | | Intron | 14434 |
| | | Intron | 11049 |
| | | Intron | 9570 |
| | | Intron | 7305 |
| | | Intron | 5817 |
| | | Intron | 2469 |
| | | Intron | 1765 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -369 |
| | | Upstream | -545 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -874 |
| | | Upstream | -1178 |
Motif_517 | LEAFYATAG | Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis | Upstream | -973 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Intron | 18254 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Intron | 18253 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -448 |