View conserved binding sites


Gene
VV05G09830
Description
name=GSVIVG01029084001;
Alias
GSVIVT01029084001;GSVIVG01029084001;GSVIVG01029084001
Binding siteNameDescriptionLocationPosition
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-233
Matrix_518AT2G21230Not availableUpstream-233
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Intron519
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Intron1333
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisIntron520
Intron516
Intron512
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisIntron519
Intron515
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-613