View conserved binding sites


Gene
VV05G04540
Description
name=GSVIVG01017928001;
Alias
GSVIVG01017928001;GSVIVT01017928001;GSVIVG01017928001
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-832
Upstream-833
Matrix_109GBF3Not availableUpstream-834
Matrix_113ABI5Not availableUpstream-834
Upstream-835
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-829
Matrix_123FUSCA3Not availableUpstream-1134
Upstream-1138
Matrix_133DYT1Not availableUpstream-834
Upstream-835
Matrix_134ABF1Not availableUpstream-834
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-829
Upstream-830
Matrix_153AP2Not availableDownstream2990
Upstream-732
Matrix_156POC1Not availableUpstream-834
Upstream-835
Matrix_192FHY3/FAR1Not availableUpstream-834
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-833
Upstream-834
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-834
Matrix_24POC1Not availableUpstream-829
Upstream-830
Matrix_296GBF2Not availableUpstream-834
Matrix_300bZIP68;bZIP16Not availableUpstream-834
Matrix_301PIL5Not availableUpstream-1294
Matrix_331GBF1Not availableUpstream-834
Matrix_332SPT;ALCNot availableUpstream-834
Upstream-835
Matrix_345POC1Not availableUpstream-829
Matrix_403BZR1Not availableUpstream-831
Upstream-832
Matrix_438AtbZIP63Not availableUpstream-831
Matrix_53MYC3Not availableUpstream-835
Upstream-836
Matrix_55PIF3Not availableUpstream-832
Upstream-833
Matrix_64PIF5Not availableUpstream-834
Upstream-835
Matrix_7PIF4Not availableUpstream-835
Upstream-836
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-834
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-6
Upstream-835
Upstream-1294
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-835
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-835
Motif_244ABRE-like binding site motifNot availableUpstream-835
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-835
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-835
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-835
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-838
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-836
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-836
Motif_638ABRE binding site motifNot availableUpstream-835