View conserved binding sites


Gene
VV05G03150
Description
name=GSVIVG01017761001;
Alias
GSVIVT01017761001;GSVIVG01017761001;GSVIVG01017761001
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-108
Matrix_138RRTF1Not availableUpstream-108
Matrix_224ERF1Not availableUpstream-108
Matrix_234RAP2.3Not availableUpstream-107
Matrix_277RAP2.6Not availableUpstream-108
Matrix_287ERF2Not availableUpstream-107
Matrix_288RAP2.3Not availableUpstream-108
Matrix_295ERF1Not availableUpstream-107
Matrix_298RAV1Not availableUpstream-113
Matrix_311TGA1Not availableUpstream-319
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-108
Matrix_334AT3G23230Not availableUpstream-106
Matrix_355ERF10;ERF11Not availableUpstream-108
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-113
Matrix_360ORA59Not availableUpstream-107
Matrix_363RAP2.3Not availableUpstream-108
Matrix_374AT5G07580;AT5G61590Not availableUpstream-107
Matrix_378ATERF1Not availableUpstream-107
Matrix_396AP3Not availableUpstream-63
Matrix_399TGA1Not availableUpstream-319
Matrix_406ATERF-7Not availableUpstream-109
Matrix_412GL1Not availableIntron7717
Matrix_413RAV1Not availableUpstream-113
Matrix_438AtbZIP63Not availableUpstream-320
Matrix_473RRTF1Not availableUpstream-107
Matrix_484ATERF13Not availableUpstream-107
Matrix_489RAV1Not availableUpstream-111
Matrix_50ATERF14;AT5G43410Not availableUpstream-108
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-319
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-106
Motif_119ABI3Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene productIntron5998
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-56
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-56
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-62
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-106
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-106
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-56
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-318
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-62
Motif_402AtTINY2Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thalianaUpstream-108
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-1810
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-317
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-320
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-107
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-317
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-56