Matrix_119 | RRTF1 | Not available | Upstream | -108 |
Matrix_224 | ERF1 | Not available | Upstream | -108 |
Matrix_234 | RAP2.3 | Not available | Upstream | -107 |
Matrix_287 | ERF2 | Not available | Upstream | -107 |
Matrix_288 | RAP2.3 | Not available | Upstream | -108 |
Matrix_295 | ERF1 | Not available | Upstream | -107 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -108 |
Matrix_334 | AT3G23230 | Not available | Upstream | -106 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -108 |
Matrix_360 | ORA59 | Not available | Upstream | -107 |
Matrix_363 | RAP2.3 | Not available | Upstream | -108 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -120 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -107 |
Matrix_378 | ATERF1 | Not available | Upstream | -107 |
Matrix_396 | AP3 | Not available | Intron | 180 |
| | | Intron | 222 |
| | | Intron | 239 |
Matrix_406 | ATERF-7 | Not available | Upstream | -109 |
Matrix_473 | RRTF1 | Not available | Upstream | -107 |
Matrix_48 | PI | Not available | Upstream | -84 |
Matrix_484 | ATERF13 | Not available | Upstream | -107 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -108 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -106 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -143 |
| | | Upstream | -141 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Intron | 181 |
| | | Intron | 223 |
| | | Intron | 240 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -124 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -106 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -106 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Intron | 182 |
| | | Intron | 224 |
| | | Intron | 241 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -123 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -143 |
| | | Upstream | -141 |
| | | Upstream | -139 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -107 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -145 |
| | | Upstream | -143 |
| | | Upstream | -141 |
| | | Upstream | -139 |
| | | Upstream | -137 |
| | | Upstream | -135 |
| | | Upstream | -133 |
| | | Upstream | -131 |
| | | Upstream | -121 |
| | | Upstream | -119 |
| | | Upstream | -117 |
| | | Upstream | -115 |
| | | Upstream | -28 |