View conserved binding sites


Gene
VV01G03040
Description
name=GSVIVG01010243001;
Alias
GSVIVG01010243001;GSVIVT01010243001;GSVIVG01010243001
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-108
Matrix_224ERF1Not availableUpstream-108
Matrix_234RAP2.3Not availableUpstream-107
Matrix_287ERF2Not availableUpstream-107
Matrix_288RAP2.3Not availableUpstream-108
Matrix_295ERF1Not availableUpstream-107
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-108
Matrix_334AT3G23230Not availableUpstream-106
Matrix_355ERF10;ERF11Not availableUpstream-108
Matrix_360ORA59Not availableUpstream-107
Matrix_363RAP2.3Not availableUpstream-108
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-120
Matrix_374AT5G07580;AT5G61590Not availableUpstream-107
Matrix_378ATERF1Not availableUpstream-107
Matrix_396AP3Not availableIntron180
Intron222
Intron239
Matrix_406ATERF-7Not availableUpstream-109
Matrix_473RRTF1Not availableUpstream-107
Matrix_48PINot availableUpstream-84
Matrix_484ATERF13Not availableUpstream-107
Matrix_50ATERF14;AT5G43410Not availableUpstream-108
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-106
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-143
Upstream-141
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsIntron181
Intron223
Intron240
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-124
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-106
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-106
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisIntron182
Intron224
Intron241
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-123
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-143
Upstream-141
Upstream-139
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-107
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-145
Upstream-143
Upstream-141
Upstream-139
Upstream-137
Upstream-135
Upstream-133
Upstream-131
Upstream-121
Upstream-119
Upstream-117
Upstream-115
Upstream-28