| Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1807 |
| Matrix_120 | BEE2 | Not available | Upstream | -1808 |
| Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -1000 |
| | | Upstream | -1103 |
| | | Upstream | -1206 |
| | | Upstream | -1309 |
| Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -1808 |
| Matrix_315 | MYB111 | Not available | Upstream | -1668 |
| Matrix_332 | SPT;ALC | Not available | Upstream | -1809 |
| Matrix_369 | AT2G18300 | Not available | Upstream | -1808 |
| Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -1676 |
| Matrix_449 | BIM2 | Not available | Upstream | -1808 |
| Matrix_455 | MYB111 | Not available | Upstream | -1668 |
| Matrix_53 | MYC3 | Not available | Upstream | -1810 |
| Matrix_64 | PIF5 | Not available | Upstream | -1809 |
| Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1809 |
| Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Upstream | -458 |
| Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -1668 |
| | | Upstream | -1675 |
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