Matrix_101 | ERF5 | Not available | Upstream | -733 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -734 |
Matrix_119 | RRTF1 | Not available | Upstream | -732 |
Matrix_138 | RRTF1 | Not available | Upstream | -732 |
Matrix_146 | ORA47 | Not available | Upstream | -733 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -731 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -732 |
Matrix_190 | ATERF1 | Not available | Upstream | -734 |
Matrix_224 | ERF1 | Not available | Upstream | -735 |
| | | Upstream | -732 |
Matrix_234 | RAP2.3 | Not available | Upstream | -733 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -732 |
Matrix_252 | RAP2.6 | Not available | Upstream | -736 |
| | | Upstream | -733 |
Matrix_261 | ATERF-1 | Not available | Upstream | -732 |
Matrix_272 | DEAR4 | Not available | Upstream | -736 |
| | | Upstream | -733 |
Matrix_287 | ERF2 | Not available | Upstream | -733 |
Matrix_288 | RAP2.3 | Not available | Upstream | -732 |
Matrix_295 | ERF1 | Not available | Upstream | -731 |
Matrix_321 | HRD | Not available | Upstream | -732 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -732 |
Matrix_334 | AT3G23230 | Not available | Upstream | -732 |
Matrix_343 | AT2G33710 | Not available | Upstream | -733 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -731 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -732 |
Matrix_360 | ORA59 | Not available | Upstream | -731 |
Matrix_362 | DEAR3 | Not available | Upstream | -736 |
Matrix_363 | RAP2.3 | Not available | Upstream | -732 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -732 |
| | | Upstream | -731 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -735 |
| | | Upstream | -732 |
Matrix_378 | ATERF1 | Not available | Upstream | -733 |
Matrix_406 | ATERF-7 | Not available | Upstream | -731 |
Matrix_409 | DEAR3 | Not available | Upstream | -735 |
| | | Upstream | -732 |
Matrix_414 | AGL15 | Not available | Upstream | -191 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -732 |
Matrix_448 | ATERF6 | Not available | Upstream | -732 |
Matrix_45 | DRN | Not available | Upstream | -731 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -735 |
| | | Upstream | -732 |
Matrix_462 | ATERF-8 | Not available | Upstream | -731 |
Matrix_463 | HAT3.1 | Not available | Upstream | -737 |
Matrix_473 | RRTF1 | Not available | Upstream | -733 |
Matrix_484 | ATERF13 | Not available | Upstream | -731 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -732 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -732 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -732 |
Matrix_517 | ERF12 | Not available | Upstream | -731 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -735 |
| | | Upstream | -732 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -732 |
Matrix_91 | CRF3 | Not available | Upstream | -732 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -235 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -723 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -945 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -791 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -730 |
Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | Upstream | -204 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -792 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Upstream | -790 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -946 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -250 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -253 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -226 |