View conserved binding sites


Gene
ST12G030480
Description
Transcription factor (AHRD V1 *-** D6MKM4_9ASPA); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Alias
gene:Sotub12g030480;Sotub12g030480.1.1;Sotub12g030480;Sotub12g030480.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-733
Matrix_110ATABI4;AT3G57600Not availableUpstream-734
Matrix_119RRTF1Not availableUpstream-732
Matrix_138RRTF1Not availableUpstream-732
Matrix_146ORA47Not availableUpstream-733
Matrix_147ERF3;AT1G80580Not availableUpstream-731
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-732
Matrix_190ATERF1Not availableUpstream-734
Matrix_224ERF1Not availableUpstream-735
Upstream-732
Matrix_234RAP2.3Not availableUpstream-733
Matrix_243RAP2.12;RAP2.2Not availableUpstream-732
Matrix_252RAP2.6Not availableUpstream-736
Upstream-733
Matrix_261ATERF-1Not availableUpstream-732
Matrix_272DEAR4Not availableUpstream-736
Upstream-733
Matrix_287ERF2Not availableUpstream-733
Matrix_288RAP2.3Not availableUpstream-732
Matrix_295ERF1Not availableUpstream-731
Matrix_321HRDNot availableUpstream-732
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-732
Matrix_334AT3G23230Not availableUpstream-732
Matrix_343AT2G33710Not availableUpstream-733
Matrix_344ATERF15;AT4G18450Not availableUpstream-731
Matrix_355ERF10;ERF11Not availableUpstream-732
Matrix_360ORA59Not availableUpstream-731
Matrix_362DEAR3Not availableUpstream-736
Matrix_363RAP2.3Not availableUpstream-732
Matrix_374AT5G07580;AT5G61590Not availableUpstream-732
Upstream-731
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-735
Upstream-732
Matrix_378ATERF1Not availableUpstream-733
Matrix_406ATERF-7Not availableUpstream-731
Matrix_409DEAR3Not availableUpstream-735
Upstream-732
Matrix_414AGL15Not availableUpstream-191
Matrix_426CRF1;CRF2Not availableUpstream-732
Matrix_448ATERF6Not availableUpstream-732
Matrix_45DRNNot availableUpstream-731
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-735
Upstream-732
Matrix_462ATERF-8Not availableUpstream-731
Matrix_463HAT3.1Not availableUpstream-737
Matrix_473RRTF1Not availableUpstream-733
Matrix_484ATERF13Not availableUpstream-731
Matrix_493AT1G22985;AT1G71130Not availableUpstream-732
Matrix_50ATERF14;AT5G43410Not availableUpstream-732
Matrix_506DRNL;ATERF-4Not availableUpstream-732
Matrix_517ERF12Not availableUpstream-731
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-735
Upstream-732
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-732
Matrix_91CRF3Not availableUpstream-732
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-235
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-723
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-945
Motif_270ELRECOREPCRP1ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in ArabidopsisUpstream-791
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-730
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-204
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-792
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-790
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-946
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-250
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-253
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-226