View conserved binding sites


Gene
ST11G024190
Description
DNA ligase (AHRD V1 **** B9HQN9_POPTR); contains Interpro domain(s) IPR000977 ATP-dependent DNA ligase
Alias
gene:Sotub11g024190;Sotub11g024190.1.1;Sotub11g024190;Sotub11g024190.1.1
Binding siteNameDescriptionLocationPosition
Matrix_488ABF1Not availableUpstream-47
Motif_226E2F1OSPCNAre2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-56
Motif_372E2FATE2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expressionUpstream-55
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-56
Motif_663E2F binding site motif;E2F/DP BS in AtCDC6Not availableUpstream-56