View conserved binding sites


Gene
ST09G027860
Description
Chalcone synthase (AHRD V1 ***- Q56I79_9SOLN); contains Interpro domain(s) IPR011141 Polyketide synthase, type III IPR018088 Chalcone/stilbene synthase, active site IPR001099 Chalcone/stilbene synthase, N-terminal
Alias
gene:Sotub09g027860;Sotub09g027860.1.1;Sotub09g027860;Sotub09g027860.1.1;Q43163
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-204
Matrix_14ZCW32;AT5G62610Not availableUpstream-203
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-185
Matrix_153AP2Not availableUpstream-204
Matrix_156POC1Not availableUpstream-202
Matrix_211MYB3Not availableUpstream-1760
Matrix_299PFG3Not availableUpstream-1759
Matrix_315MYB111Not availableUpstream-1759
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-202
Upstream-180
Matrix_369AT2G18300Not availableUpstream-203
Matrix_514DYT1Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen developmentUpstream-205
Matrix_64PIF5Not availableUpstream-202
Upstream-180
Matrix_7PIF4Not availableUpstream-201
Matrix_77PRR5Not availableUpstream-204
Matrix_80BIM1Not availableUpstream-180
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-993
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-202
Upstream-200
Upstream-180
Upstream-178
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-201
Upstream-179
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-201
Upstream-179
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-201
Upstream-180
Motif_244ABRE-like binding site motifNot availableUpstream-421
Motif_256RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-184
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-201
Upstream-179