Matrix_113 | ABI5 | Not available | Intron | 1263 |
| | | Intron | 1265 |
| | | Intron | 1491 |
Matrix_122 | ABF1;AREB2 | Not available | Intron | 1263 |
Matrix_129 | ABF1 | Not available | Intron | 1264 |
| | | Intron | 1490 |
Matrix_145 | GBF4;AT5G44080 | Not available | Intron | 1265 |
| | | Intron | 1491 |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -392 |
Matrix_192 | FHY3/FAR1 | Not available | Intron | 1261 |
| | | Intron | 1265 |
| | | Intron | 1491 |
Matrix_214 | AP1 | Not available | Intron | 1262 |
| | | Intron | 1488 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 1265 |
| | | Intron | 1491 |
Matrix_264 | ATAREB1 | Not available | Intron | 1261 |
| | | Intron | 1264 |
| | | Intron | 1490 |
Matrix_300 | bZIP68;bZIP16 | Not available | Intron | 1223 |
| | | Intron | 1264 |
| | | Intron | 1265 |
| | | Intron | 1491 |
Matrix_301 | PIL5 | Not available | Intron | 1259 |
| | | Intron | 1491 |
| | | Intron | 3155 |
Matrix_332 | SPT;ALC | Not available | Intron | 1265 |
| | | Intron | 1491 |
Matrix_338 | AP2 | Not available | Intron | 1261 |
| | | Intron | 1487 |
Matrix_389 | ILR3 | Not available | Intron | 1264 |
Matrix_403 | BZR1 | Not available | Intron | 1262 |
| | | Intron | 1488 |
Matrix_443 | AGL15 | Not available | Intron | 1262 |
| | | Intron | 1488 |
Matrix_48 | PI | Not available | Upstream | -415 |
Matrix_7 | PIF4 | Not available | Intron | 1266 |
| | | Intron | 1492 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -477 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -389 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -390 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Downstream | 8410 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 8480 |
Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | Downstream | 8478 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -447 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Downstream | 8460 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -460 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -460 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -416 |