View conserved binding sites


Gene
ST09G018510
Description
BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Alias
gene:Sotub09g018510;Sotub09g018510.1.1;Sotub09g018510;Sotub09g018510.1.1
Binding siteNameDescriptionLocationPosition
Matrix_113ABI5Not availableIntron1263
Intron1265
Intron1491
Matrix_122ABF1;AREB2Not availableIntron1263
Matrix_129ABF1Not availableIntron1264
Intron1490
Matrix_145GBF4;AT5G44080Not availableIntron1265
Intron1491
Matrix_172BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-392
Matrix_192FHY3/FAR1Not availableIntron1261
Intron1265
Intron1491
Matrix_214AP1Not availableIntron1262
Intron1488
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron1265
Intron1491
Matrix_264ATAREB1Not availableIntron1261
Intron1264
Intron1490
Matrix_300bZIP68;bZIP16Not availableIntron1223
Intron1264
Intron1265
Intron1491
Matrix_301PIL5Not availableIntron1259
Intron1491
Intron3155
Matrix_332SPT;ALCNot availableIntron1265
Intron1491
Matrix_338AP2Not availableIntron1261
Intron1487
Matrix_389ILR3Not availableIntron1264
Matrix_403BZR1Not availableIntron1262
Intron1488
Matrix_443AGL15Not availableIntron1262
Intron1488
Matrix_48PINot availableUpstream-415
Matrix_7PIF4Not availableIntron1266
Intron1492
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-477
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-389
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-390
Motif_235C8GCARGATBinding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)Downstream8410
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream8480
Motif_285HDZIP2ATATHB2Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own geneDownstream8478
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-447
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream8460
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-460
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-460
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-416