View conserved binding sites


Gene
ST09G011680
Description
Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7L7R1_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Alias
gene:Sotub09g011680;Sotub09g011680.1.1;Sotub09g011680;Sotub09g011680.1.1
Binding siteNameDescriptionLocationPosition
Matrix_224ERF1Not availableUpstream-190
Matrix_252RAP2.6Not availableUpstream-188
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-187
Matrix_343AT2G33710Not availableUpstream-188
Matrix_355ERF10;ERF11Not availableUpstream-187
Matrix_360ORA59Not availableUpstream-191
Matrix_378ATERF1Not availableUpstream-188
Matrix_406ATERF-7Not availableUpstream-189
Matrix_426CRF1;CRF2Not availableUpstream-189
Matrix_506DRNL;ATERF-4Not availableUpstream-189
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-187
Matrix_91CRF3Not availableUpstream-188
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-371
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-191
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-372
Upstream-376
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-371
Upstream-375