Matrix_101 | ERF5 | Not available | Upstream | -11 |
| | | Upstream | -14 |
Matrix_104 | PI | Not available | Upstream | -124 |
| | | Upstream | -125 |
Matrix_109 | GBF3 | Not available | Upstream | -124 |
| | | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -127 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -8 |
Matrix_113 | ABI5 | Not available | Upstream | -124 |
| | | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -127 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -121 |
| | | Upstream | -122 |
| | | Upstream | -1521 |
Matrix_119 | RRTF1 | Not available | Upstream | -9 |
Matrix_120 | BEE2 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_129 | ABF1 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_134 | ABF1 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_138 | RRTF1 | Not available | Upstream | -9 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -126 |
| | | Upstream | -127 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -10 |
| | | Upstream | -11 |
| | | Upstream | -14 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -121 |
| | | Upstream | -122 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -171 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -11 |
| | | Upstream | -12 |
| | | Upstream | -15 |
Matrix_156 | POC1 | Not available | Upstream | -124 |
| | | Upstream | -125 |
| | | Upstream | -1524 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -9 |
Matrix_190 | ATERF1 | Not available | Upstream | -8 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -122 |
| | | Upstream | -123 |
| | | Upstream | -126 |
| | | Upstream | -127 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -122 |
| | | Upstream | -123 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_214 | AP1 | Not available | Upstream | -123 |
| | | Upstream | -124 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -122 |
| | | Upstream | -123 |
Matrix_224 | ERF1 | Not available | Upstream | -6 |
| | | Upstream | -7 |
| | | Upstream | -9 |
| | | Upstream | -10 |
| | | Upstream | -13 |
Matrix_24 | POC1 | Not available | Upstream | -121 |
| | | Upstream | -122 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -11 |
| | | Upstream | -12 |
| | | Upstream | -15 |
Matrix_247 | PIF3 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_25 | AP3 | Not available | Upstream | -1357 |
Matrix_252 | RAP2.6 | Not available | Upstream | -7 |
Matrix_261 | ATERF-1 | Not available | Upstream | -10 |
Matrix_264 | ATAREB1 | Not available | Upstream | -122 |
| | | Upstream | -123 |
| | | Upstream | -125 |
| | | Upstream | -126 |
Matrix_288 | RAP2.3 | Not available | Upstream | -9 |
| | | Upstream | -10 |
| | | Upstream | -13 |
Matrix_295 | ERF1 | Not available | Upstream | -10 |
Matrix_296 | GBF2 | Not available | Upstream | -126 |
| | | Upstream | -127 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -127 |
Matrix_301 | PIL5 | Not available | Upstream | -106 |
| | | Upstream | -126 |
| | | Upstream | -127 |
Matrix_321 | HRD | Not available | Upstream | -10 |
| | | Upstream | -11 |
| | | Upstream | -14 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -9 |
Matrix_331 | GBF1 | Not available | Upstream | -124 |
| | | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -127 |
Matrix_332 | SPT;ALC | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_334 | AT3G23230 | Not available | Upstream | -11 |
Matrix_338 | AP2 | Not available | Upstream | -122 |
| | | Upstream | -123 |
Matrix_343 | AT2G33710 | Not available | Upstream | -7 |
| | | Upstream | -8 |
| | | Upstream | -11 |
| | | Upstream | -14 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -14 |
Matrix_345 | POC1 | Not available | Upstream | -121 |
| | | Upstream | -122 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -9 |
Matrix_356 | PRR5 | Not available | Upstream | -118 |
| | | Upstream | -119 |
| | | Upstream | -122 |
| | | Upstream | -123 |
Matrix_360 | ORA59 | Not available | Upstream | -10 |
Matrix_363 | RAP2.3 | Not available | Upstream | -9 |
| | | Upstream | -10 |
| | | Upstream | -13 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -13 |
| | | Upstream | -14 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -10 |
Matrix_378 | ATERF1 | Not available | Upstream | -7 |
Matrix_387 | ORA47 | Not available | Upstream | -171 |
| | | Upstream | -172 |
Matrix_389 | ILR3 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -172 |
Matrix_403 | BZR1 | Not available | Upstream | -123 |
| | | Upstream | -124 |
Matrix_406 | ATERF-7 | Not available | Upstream | -8 |
| | | Upstream | -9 |
| | | Upstream | -12 |
Matrix_409 | DEAR3 | Not available | Upstream | -9 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -11 |
Matrix_433 | ATERF1 | Not available | Upstream | -137 |
| | | Upstream | -138 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -125 |
| | | Upstream | -126 |
Matrix_443 | AGL15 | Not available | Upstream | -123 |
| | | Upstream | -124 |
Matrix_448 | ATERF6 | Not available | Upstream | -4 |
| | | Upstream | -13 |
Matrix_45 | DRN | Not available | Upstream | -10 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -9 |
Matrix_462 | ATERF-8 | Not available | Upstream | -8 |
| | | Upstream | -9 |
| | | Upstream | -12 |
Matrix_466 | PRR5 | Not available | Upstream | -122 |
Matrix_473 | RRTF1 | Not available | Upstream | -7 |
Matrix_480 | BES1 | Not available | Upstream | -124 |
| | | Upstream | -125 |
Matrix_484 | ATERF13 | Not available | Upstream | -10 |
| | | Upstream | -11 |
| | | Upstream | -14 |
Matrix_488 | ABF1 | Not available | Upstream | -118 |
| | | Upstream | -124 |
| | | Upstream | -125 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -10 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -138 |
| | | Upstream | -139 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -9 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -11 |
Matrix_517 | ERF12 | Not available | Upstream | -10 |
Matrix_53 | MYC3 | Not available | Upstream | -123 |
| | | Upstream | -124 |
Matrix_55 | PIF3 | Not available | Upstream | -124 |
| | | Upstream | -125 |
| | | Upstream | -1524 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -6 |
| | | Upstream | -9 |
Matrix_7 | PIF4 | Not available | Upstream | -125 |
| | | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -128 |
Matrix_77 | PRR5 | Not available | Upstream | -124 |
| | | Upstream | -125 |
Matrix_80 | BIM1 | Not available | Upstream | -126 |
| | | Upstream | -127 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -11 |
Matrix_91 | CRF3 | Not available | Upstream | -10 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -145 |
Motif_120 | ABRETAEM | ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC | Upstream | -125 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -127 |
| | | Upstream | -1526 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -165 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Upstream | -172 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -127 |
| | | Upstream | -158 |
| | | Upstream | -165 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -125 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -126 |
| | | Upstream | -127 |
| | | Upstream | -1525 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -165 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -125 |
| | | Upstream | -127 |
| | | Upstream | -1524 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -127 |
| | | Upstream | -158 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -125 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -154 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -11 |
| | | Upstream | -14 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -165 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -127 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -173 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -126 |
| | | Upstream | -1525 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -136 |
| | | Upstream | -140 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -158 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -144 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -125 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -125 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -125 |
| | | Upstream | -128 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -125 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -124 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -549 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -128 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -124 |