View conserved binding sites


Gene
ST08G009950
Description
Serine/threonine protein kinase (AHRD V1 *-** C4PKQ3_PRUPE); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase
Alias
gene:Sotub08g009950;Sotub08g009950.1.1;Sotub08g009950;Sotub08g009950.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-11
Upstream-14
Matrix_104PINot availableUpstream-124
Upstream-125
Matrix_109GBF3Not availableUpstream-124
Upstream-125
Upstream-126
Upstream-127
Matrix_110ATABI4;AT3G57600Not availableUpstream-8
Matrix_113ABI5Not availableUpstream-124
Upstream-125
Upstream-126
Upstream-127
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-121
Upstream-122
Upstream-1521
Matrix_119RRTF1Not availableUpstream-9
Matrix_120BEE2Not availableUpstream-125
Upstream-126
Matrix_122ABF1;AREB2Not availableUpstream-125
Upstream-126
Matrix_129ABF1Not availableUpstream-125
Upstream-126
Matrix_134ABF1Not availableUpstream-125
Upstream-126
Matrix_138RRTF1Not availableUpstream-9
Matrix_145GBF4;AT5G44080Not availableUpstream-126
Upstream-127
Matrix_147ERF3;AT1G80580Not availableUpstream-10
Upstream-11
Upstream-14
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-121
Upstream-122
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-171
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-11
Upstream-12
Upstream-15
Matrix_156POC1Not availableUpstream-124
Upstream-125
Upstream-1524
Matrix_171LBD3;LBD4Not availableUpstream-9
Matrix_190ATERF1Not availableUpstream-8
Matrix_192FHY3/FAR1Not availableUpstream-122
Upstream-123
Upstream-126
Upstream-127
Matrix_194HYH;HY5Not availableUpstream-122
Upstream-123
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-125
Upstream-126
Matrix_214AP1Not availableUpstream-123
Upstream-124
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-122
Upstream-123
Matrix_224ERF1Not availableUpstream-6
Upstream-7
Upstream-9
Upstream-10
Upstream-13
Matrix_24POC1Not availableUpstream-121
Upstream-122
Matrix_243RAP2.12;RAP2.2Not availableUpstream-11
Upstream-12
Upstream-15
Matrix_247PIF3Not availableUpstream-125
Upstream-126
Matrix_25AP3Not availableUpstream-1357
Matrix_252RAP2.6Not availableUpstream-7
Matrix_261ATERF-1Not availableUpstream-10
Matrix_264ATAREB1Not availableUpstream-122
Upstream-123
Upstream-125
Upstream-126
Matrix_288RAP2.3Not availableUpstream-9
Upstream-10
Upstream-13
Matrix_295ERF1Not availableUpstream-10
Matrix_296GBF2Not availableUpstream-126
Upstream-127
Matrix_300bZIP68;bZIP16Not availableUpstream-125
Upstream-126
Upstream-127
Matrix_301PIL5Not availableUpstream-106
Upstream-126
Upstream-127
Matrix_321HRDNot availableUpstream-10
Upstream-11
Upstream-14
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-9
Matrix_331GBF1Not availableUpstream-124
Upstream-125
Upstream-126
Upstream-127
Matrix_332SPT;ALCNot availableUpstream-125
Upstream-126
Matrix_334AT3G23230Not availableUpstream-11
Matrix_338AP2Not availableUpstream-122
Upstream-123
Matrix_343AT2G33710Not availableUpstream-7
Upstream-8
Upstream-11
Upstream-14
Matrix_344ATERF15;AT4G18450Not availableUpstream-14
Matrix_345POC1Not availableUpstream-121
Upstream-122
Matrix_355ERF10;ERF11Not availableUpstream-9
Matrix_356PRR5Not availableUpstream-118
Upstream-119
Upstream-122
Upstream-123
Matrix_360ORA59Not availableUpstream-10
Matrix_363RAP2.3Not availableUpstream-9
Upstream-10
Upstream-13
Matrix_374AT5G07580;AT5G61590Not availableUpstream-13
Upstream-14
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-10
Matrix_378ATERF1Not availableUpstream-7
Matrix_387ORA47Not availableUpstream-171
Upstream-172
Matrix_389ILR3Not availableUpstream-125
Upstream-126
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-172
Matrix_403BZR1Not availableUpstream-123
Upstream-124
Matrix_406ATERF-7Not availableUpstream-8
Upstream-9
Upstream-12
Matrix_409DEAR3Not availableUpstream-9
Matrix_426CRF1;CRF2Not availableUpstream-11
Matrix_433ATERF1Not availableUpstream-137
Upstream-138
Matrix_438AtbZIP63Not availableUpstream-125
Upstream-126
Matrix_443AGL15Not availableUpstream-123
Upstream-124
Matrix_448ATERF6Not availableUpstream-4
Upstream-13
Matrix_45DRNNot availableUpstream-10
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-9
Matrix_462ATERF-8Not availableUpstream-8
Upstream-9
Upstream-12
Matrix_466PRR5Not availableUpstream-122
Matrix_473RRTF1Not availableUpstream-7
Matrix_480BES1Not availableUpstream-124
Upstream-125
Matrix_484ATERF13Not availableUpstream-10
Upstream-11
Upstream-14
Matrix_488ABF1Not availableUpstream-118
Upstream-124
Upstream-125
Matrix_493AT1G22985;AT1G71130Not availableUpstream-10
Matrix_5AT5G51190;ERF104Not availableUpstream-138
Upstream-139
Matrix_50ATERF14;AT5G43410Not availableUpstream-9
Matrix_506DRNL;ATERF-4Not availableUpstream-11
Matrix_517ERF12Not availableUpstream-10
Matrix_53MYC3Not availableUpstream-123
Upstream-124
Matrix_55PIF3Not availableUpstream-124
Upstream-125
Upstream-1524
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-6
Upstream-9
Matrix_7PIF4Not availableUpstream-125
Upstream-126
Upstream-127
Upstream-128
Matrix_77PRR5Not availableUpstream-124
Upstream-125
Matrix_80BIM1Not availableUpstream-126
Upstream-127
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-11
Matrix_91CRF3Not availableUpstream-10
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-145
Motif_120ABRETAEMABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGCUpstream-125
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-127
Upstream-1526
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-165
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-172
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-127
Upstream-158
Upstream-165
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-125
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-126
Upstream-127
Upstream-1525
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-165
Motif_244ABRE-like binding site motifNot availableUpstream-125
Upstream-127
Upstream-1524
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-127
Upstream-158
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-125
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-154
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-11
Upstream-14
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-165
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-127
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-173
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-126
Upstream-1525
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-136
Upstream-140
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-158
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-144
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-125
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-125
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-125
Upstream-128
Motif_638ABRE binding site motifNot availableUpstream-125
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-124
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-549
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-128
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-124