View conserved binding sites


Gene
ST06G017820
Description
Kinesin like protein (AHRD V1 *-*- Q9SVI8_ARATH); contains Interpro domain(s) IPR001752 Kinesin, motor region
Alias
gene:Sotub06g017820;Sotub06g017820.1.1;Sotub06g017820;Sotub06g017820.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-43
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-34
Matrix_113ABI5Not availableUpstream-32
Matrix_14ZCW32;AT5G62610Not availableUpstream-32
Matrix_151ASIL1Not availableUpstream-42
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-41
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-42
Matrix_24POC1Not availableUpstream-37
Matrix_261ATERF-1Not availableUpstream-42
Matrix_301PIL5Not availableUpstream-32
Matrix_323BIM3Not availableUpstream-33
Matrix_344ATERF15;AT4G18450Not availableUpstream-41
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-32
Matrix_369AT2G18300Not availableUpstream-35
Matrix_374AT5G07580;AT5G61590Not availableUpstream-41
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-41
Matrix_403BZR1Not availableUpstream-35
Matrix_406ATERF-7Not availableUpstream-41
Matrix_448ATERF6Not availableUpstream-42
Matrix_449BIM2Not availableUpstream-33
Matrix_462ATERF-8Not availableUpstream-41
Matrix_480BES1Not availableUpstream-33
Matrix_488ABF1Not availableUpstream-41
Matrix_5AT5G51190;ERF104Not availableUpstream-41
Matrix_53MYC3Not availableUpstream-35
Matrix_64PIF5Not availableUpstream-32
Matrix_80BIM1Not availableUpstream-32
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-32
Upstream-30
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-31
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-31
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-32
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-54
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-53
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-31
Motif_435E2FBNTRNRE2Fb found in the tobacco RNR (Ribonucleotide reductase) gene promoter; Binding site of tobacco E2F; Involved in upregulation of the promoter at G1/S transition; dE2F (distal reverse E2F element) important for regulating specific RNR1a gene expression in respsonse to UV-C irradiationUpstream-52
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-52
Upstream-44
Motif_469QELEMENTZMZM13Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize geneUpstream-27
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-35
Motif_689ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-30
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-15
Upstream-13