Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchView conserved binding sites
- Gene
- ST05G019110
- Description
- E3 ubiquitin-protein ligase CG7694 (AHRD V1 *--- RN181_DROME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
- Alias
- gene:Sotub05g019110;Sotub05g019110.1.1;Sotub05g019110;Sotub05g019110.1.1
| Binding site | Name | Description | Location | Position |
|---|---|---|---|---|
| Matrix_101 | ERF5 | Not available | Upstream | -432 |
| Upstream | -433 | |||
| Matrix_119 | RRTF1 | Not available | Upstream | -434 |
| Matrix_138 | RRTF1 | Not available | Upstream | -434 |
| Matrix_146 | ORA47 | Not available | Upstream | -433 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -434 |
| Matrix_190 | ATERF1 | Not available | Upstream | -432 |
| Upstream | -433 | |||
| Matrix_224 | ERF1 | Not available | Upstream | -431 |
| Upstream | -434 | |||
| Matrix_234 | RAP2.3 | Not available | Upstream | -433 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -431 |
| Upstream | -434 | |||
| Matrix_252 | RAP2.6 | Not available | Upstream | -433 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -434 |
| Matrix_272 | DEAR4 | Not available | Upstream | -433 |
| Matrix_287 | ERF2 | Not available | Upstream | -433 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -434 |
| Matrix_295 | ERF1 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_321 | HRD | Not available | Upstream | -434 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -434 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -434 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -433 |
| Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -432 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -434 |
| Matrix_360 | ORA59 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_363 | RAP2.3 | Not available | Upstream | -434 |
| Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -431 |
| Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -434 |
| Matrix_378 | ATERF1 | Not available | Upstream | -433 |
| Matrix_405 | DREB2C | Not available | Upstream | -432 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_409 | DEAR3 | Not available | Upstream | -434 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -434 |
| Matrix_45 | DRN | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_462 | ATERF-8 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_473 | RRTF1 | Not available | Upstream | -433 |
| Matrix_484 | ATERF13 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -434 |
| Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -432 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -431 |
| Upstream | -434 | |||
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -434 |
| Matrix_517 | ERF12 | Not available | Upstream | -432 |
| Upstream | -435 | |||
| Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -434 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -434 |
| Matrix_91 | CRF3 | Not available | Upstream | -434 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -433 |
| Upstream | -436 |