View conserved binding sites


Gene
ST05G016490
Description
Histidine kinase 3B (AHRD V1 ***- C1IHU2_POPTR); contains Interpro domain(s) IPR006189 CHASE
Alias
gene:Sotub05g016490;Sotub05g016490.1.1;Sotub05g016490;Sotub05g016490.1.1
Binding siteNameDescriptionLocationPosition
Matrix_106AT5G47390Not availableUpstream-782
Matrix_472ZN_C2_H2Not availableUpstream-551
Matrix_497AP3Not availableUpstream-1290
Matrix_67GLK1Not availableUpstream-502
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-514
Upstream-238
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-507
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-732
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-562
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-565
Motif_351GARE1OSREP1Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-562
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-466
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-562
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-1267
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-466
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-730
Upstream-462
Upstream-461
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-732
Upstream-731
Upstream-541
Upstream-456
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-66
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-466
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-731
Upstream-456
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-767