View conserved binding sites


Gene
ST04G023520
Description
Fructose-1,6-bisphosphatase class 1 (AHRD V1 ***- F16PA_LEPIN); contains Interpro domain(s) IPR000146 Fructose-1,6-bisphosphatase
Alias
gene:Sotub04g023520;Sotub04g023520.1.1;Sotub04g023520;Sotub04g023520.1.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-106
Upstream-107
Upstream-542
Upstream-543
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-106
Matrix_109GBF3Not availableUpstream-106
Upstream-107
Upstream-108
Upstream-109
Upstream-542
Upstream-543
Matrix_113ABI5Not availableUpstream-106
Upstream-107
Upstream-542
Upstream-543
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-104
Upstream-105
Upstream-540
Upstream-541
Matrix_120BEE2Not availableUpstream-107
Upstream-108
Matrix_122ABF1;AREB2Not availableUpstream-106
Upstream-107
Upstream-542
Upstream-543
Matrix_129ABF1Not availableUpstream-107
Upstream-108
Upstream-543
Upstream-544
Matrix_134ABF1Not availableUpstream-107
Upstream-108
Upstream-544
Upstream-545
Matrix_14ZCW32;AT5G62610Not availableUpstream-107
Matrix_145GBF4;AT5G44080Not availableUpstream-108
Upstream-109
Upstream-544
Upstream-545
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-103
Upstream-104
Upstream-539
Upstream-540
Matrix_156POC1Not availableUpstream-106
Upstream-107
Upstream-108
Upstream-109
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-107
Matrix_192FHY3/FAR1Not availableUpstream-104
Upstream-105
Upstream-540
Upstream-541
Matrix_194HYH;HY5Not availableUpstream-104
Upstream-105
Upstream-540
Upstream-541
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-107
Upstream-108
Matrix_214AP1Not availableUpstream-105
Upstream-106
Upstream-541
Upstream-542
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-104
Upstream-105
Matrix_233MYC3Not availableUpstream-108
Matrix_24POC1Not availableUpstream-103
Upstream-104
Upstream-539
Upstream-540
Matrix_247PIF3Not availableUpstream-107
Upstream-108
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-542
Upstream-543
Matrix_264ATAREB1Not availableUpstream-104
Upstream-105
Upstream-107
Upstream-108
Upstream-540
Upstream-541
Matrix_296GBF2Not availableUpstream-107
Upstream-108
Upstream-543
Upstream-544
Matrix_300bZIP68;bZIP16Not availableUpstream-107
Upstream-108
Upstream-109
Upstream-543
Upstream-544
Matrix_301PIL5Not availableUpstream-103
Upstream-538
Upstream-539
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-105
Matrix_331GBF1Not availableUpstream-106
Upstream-107
Upstream-108
Upstream-109
Upstream-542
Upstream-543
Matrix_332SPT;ALCNot availableUpstream-107
Upstream-108
Upstream-109
Matrix_338AP2Not availableUpstream-104
Upstream-105
Upstream-540
Upstream-541
Matrix_345POC1Not availableUpstream-104
Upstream-105
Upstream-540
Upstream-541
Matrix_356PRR5Not availableUpstream-101
Upstream-104
Upstream-105
Upstream-540
Upstream-541
Matrix_389ILR3Not availableUpstream-107
Upstream-108
Matrix_401MYB55Not availableUpstream-140
Matrix_403BZR1Not availableUpstream-105
Upstream-106
Matrix_414AGL15Not availableUpstream-114
Matrix_443AGL15Not availableUpstream-105
Upstream-106
Upstream-541
Upstream-542
Matrix_452MYB46Not availableUpstream-140
Matrix_480BES1Not availableUpstream-106
Upstream-107
Matrix_488ABF1Not availableUpstream-100
Upstream-106
Upstream-107
Upstream-542
Upstream-543
Matrix_53MYC3Not availableUpstream-105
Upstream-106
Matrix_55PIF3Not availableUpstream-106
Upstream-107
Upstream-542
Upstream-543
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-106
Matrix_64PIF5Not availableUpstream-108
Matrix_7PIF4Not availableUpstream-107
Upstream-108
Upstream-543
Upstream-544
Matrix_77PRR5Not availableUpstream-105
Upstream-106
Upstream-541
Upstream-542
Matrix_80BIM1Not availableUpstream-106
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-535
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-109
Upstream-545
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-109
Upstream-545
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-107
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-108
Upstream-109
Upstream-544
Upstream-545
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanUpstream-129
Motif_244ABRE-like binding site motifNot availableUpstream-107
Upstream-109
Upstream-254
Upstream-543
Upstream-545
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-544
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-107
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-144
Upstream-580
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-510
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-112
Upstream-548
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-109
Upstream-256
Upstream-545
Upstream-709
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-515
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-108
Upstream-109
Upstream-545
Motif_461MYB80The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thalianaUpstream-142
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-108
Motif_498SGBFGMGMAUX28bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoterUpstream-543
Motif_511RYREPEATGMGY2RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)Upstream-129
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-107
Motif_599LREBOXIIPCCHS1;HY5BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-107
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-107
Upstream-543
Motif_638ABRE binding site motifNot availableUpstream-107
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-130
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-221
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-543