View conserved binding sites


Gene
ST03G028840
Description
40S ribosomal protein S19-like (AHRD V1 ***- Q2VCJ6_SOLTU); contains Interpro domain(s) IPR001266 Ribosomal protein S19e
Alias
gene:Sotub03g028840;Sotub03g028840.1.1;Sotub03g028840;Sotub03g028840.1.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-34
Matrix_138RRTF1Not availableUpstream-34
Matrix_224ERF1Not availableUpstream-37
Matrix_234RAP2.3Not availableUpstream-35
Matrix_252RAP2.6Not availableUpstream-35
Matrix_287ERF2Not availableUpstream-38
Matrix_295ERF1Not availableUpstream-36
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-34
Matrix_343AT2G33710Not availableUpstream-35
Matrix_355ERF10;ERF11Not availableUpstream-34
Matrix_360ORA59Not availableUpstream-36
Matrix_363RAP2.3Not availableUpstream-34
Matrix_374AT5G07580;AT5G61590Not availableUpstream-37
Matrix_378ATERF1Not availableUpstream-35
Matrix_396AP3Not availableUpstream-99
Matrix_406ATERF-7Not availableUpstream-36
Upstream-33
Matrix_426CRF1;CRF2Not availableUpstream-34
Matrix_45DRNNot availableUpstream-36
Matrix_462ATERF-8Not availableUpstream-33
Matrix_473RRTF1Not availableUpstream-35
Matrix_484ATERF13Not availableUpstream-36
Matrix_493AT1G22985;AT1G71130Not availableUpstream-34
Matrix_50ATERF14;AT5G43410Not availableUpstream-37
Matrix_506DRNL;ATERF-4Not availableUpstream-34
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-34
Matrix_91CRF3Not availableUpstream-34
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-35
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-36
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-98