View conserved binding sites


Gene
ST02G025550
Description
CTP synthase (AHRD V1 ***- B6U7R1_MAIZE); contains Interpro domain(s) IPR004468 CTP synthase
Alias
gene:Sotub02g025550;Sotub02g025550.1.1;Sotub02g025550;Sotub02g025550.1.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-1664
Matrix_138RRTF1Not availableUpstream-1664
Matrix_224ERF1Not availableUpstream-298
Matrix_272DEAR4Not availableUpstream-1659
Matrix_288RAP2.3Not availableUpstream-1664
Matrix_295ERF1Not availableUpstream-297
Matrix_360ORA59Not availableUpstream-297
Matrix_363RAP2.3Not availableUpstream-1664
Matrix_378ATERF1Not availableUpstream-1663
Matrix_406ATERF-7Not availableUpstream-297
Matrix_462ATERF-8Not availableUpstream-297
Matrix_473RRTF1Not availableUpstream-1663
Matrix_484ATERF13Not availableUpstream-297
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron2374
Intron2376
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-1337
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-296
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-297
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1339
Upstream-1333
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1340
Upstream-1334
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron2372
Intron2374
Intron2376
Intron2378
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1341
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron2372
Intron2374
Intron2376
Intron2378
Intron2380
Intron2382
Intron2384
Intron2386