View conserved binding sites


Gene
ST02G023810
Description
Phosphoadenosine phosphosulfate reductase (AHRD V1 *-** E8PB96_ACIBA); contains Interpro domain(s) IPR004508 Thioredoxin-independent 5'-adenylylsulphate reductase
Alias
gene:Sotub02g023810;Sotub02g023810.1.1;Sotub02g023810;Sotub02g023810.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-301
Matrix_110ATABI4;AT3G57600Not availableUpstream-301
Matrix_151ASIL1Not availableUpstream-302
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-301
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-302
Upstream-300
Matrix_240AT4G29000Not availableUpstream-224
Matrix_243RAP2.12;RAP2.2Not availableUpstream-300
Matrix_261ATERF-1Not availableUpstream-302
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-298
Matrix_287ERF2Not availableUpstream-301
Matrix_344ATERF15;AT4G18450Not availableUpstream-301
Matrix_374AT5G07580;AT5G61590Not availableUpstream-301
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-301
Matrix_406ATERF-7Not availableUpstream-301
Matrix_409DEAR3Not availableUpstream-302
Matrix_433ATERF1Not availableUpstream-302
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-243
Matrix_448ATERF6Not availableUpstream-302
Matrix_462ATERF-8Not availableUpstream-301
Matrix_488ABF1Not availableUpstream-300
Upstream-293
Matrix_493AT1G22985;AT1G71130Not availableUpstream-301
Matrix_5AT5G51190;ERF104Not availableUpstream-301
Matrix_50ATERF14;AT5G43410Not availableUpstream-302
Matrix_59AT4G00238;AT4G00250Not availableUpstream-302
Upstream-298
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-209
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-290
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-290
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-175
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-208
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-174
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-290
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-258
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-972
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-256
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-251