View conserved binding sites


Gene
ST02G017600
Description
Phytochrome E (AHRD V1 ***- Q9M6P6_SOLLC); contains Interpro domain(s) IPR012129 Phytochrome A/B/C/D/E
Alias
gene:Sotub02g017600;Sotub02g017600.1.1;Sotub02g017600;Sotub02g017600.1.1
Binding siteNameDescriptionLocationPosition
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-414
Upstream-413
Upstream-412
Upstream-411
Upstream-410
Upstream-409
Upstream-408
Matrix_48PINot availableUpstream-421
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-68
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-70
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-65
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-426
Upstream-424
Upstream-422