View conserved binding sites


Gene
ST02G010050
Description
Short internode related sequence 5 (AHRD V1 **-- D2KC76_BRARP); contains Interpro domain(s) IPR007818 Protein of unknown function DUF702
Alias
gene:Sotub02g010050;Sotub02g010050.1.1;Sotub02g010050;Sotub02g010050.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-358
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-685
Matrix_119RRTF1Not availableUpstream-359
Matrix_138RRTF1Not availableUpstream-359
Matrix_147ERF3;AT1G80580Not availableUpstream-358
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-360
Matrix_224ERF1Not availableUpstream-359
Matrix_234RAP2.3Not availableUpstream-358
Matrix_261ATERF-1Not availableUpstream-358
Matrix_287ERF2Not availableUpstream-358
Matrix_288RAP2.3Not availableUpstream-359
Matrix_295ERF1Not availableUpstream-358
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-359
Matrix_334AT3G23230Not availableUpstream-357
Matrix_343AT2G33710Not availableUpstream-358
Matrix_355ERF10;ERF11Not availableUpstream-359
Matrix_360ORA59Not availableUpstream-358
Matrix_363RAP2.3Not availableUpstream-359
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-358
Matrix_378ATERF1Not availableUpstream-358
Matrix_406ATERF-7Not availableUpstream-360
Matrix_409DEAR3Not availableUpstream-359
Matrix_414AGL15Not availableUpstream-390
Matrix_426CRF1;CRF2Not availableUpstream-357
Matrix_45DRNNot availableUpstream-358
Matrix_462ATERF-8Not availableUpstream-360
Matrix_473RRTF1Not availableUpstream-358
Matrix_48PINot availableUpstream-305
Intron851
Matrix_484ATERF13Not availableUpstream-358
Matrix_493AT1G22985;AT1G71130Not availableUpstream-358
Matrix_50ATERF14;AT5G43410Not availableUpstream-359
Matrix_506DRNL;ATERF-4Not availableUpstream-357
Matrix_517ERF12Not availableUpstream-358
Matrix_55PIF3Not availableUpstream-682
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-357
Matrix_91CRF3Not availableUpstream-358
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-380
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-298
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-62
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-357
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1554
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1555
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1552
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-62
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1836
Motif_642SEF1MOTIFSEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) geneUpstream-1558
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-394
Upstream-392
Upstream-390