Matrix_101 | ERF5 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -310 |
Matrix_119 | RRTF1 | Not available | Upstream | -312 |
Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -270 |
Matrix_130 | TCP16 | Not available | Upstream | -530 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -531 |
| | | Upstream | -530 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_151 | ASIL1 | Not available | Upstream | -312 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -310 |
Matrix_172 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -357 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -270 |
Matrix_190 | ATERF1 | Not available | Upstream | -311 |
| | | Upstream | -310 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -533 |
| | | Upstream | -528 |
Matrix_216 | TCP16 | Not available | Upstream | -530 |
Matrix_224 | ERF1 | Not available | Upstream | -309 |
Matrix_232 | TCP23 | Not available | Upstream | -532 |
| | | Upstream | -529 |
Matrix_234 | RAP2.3 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_24 | POC1 | Not available | Upstream | -540 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -310 |
Matrix_244 | DREB2C | Not available | Upstream | -312 |
Matrix_252 | RAP2.6 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_261 | ATERF-1 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -530 |
Matrix_272 | DEAR4 | Not available | Upstream | -308 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -530 |
Matrix_281 | TCP13 | Not available | Upstream | -528 |
Matrix_287 | ERF2 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_294 | MEE35 | Not available | Upstream | -528 |
Matrix_295 | ERF1 | Not available | Upstream | -308 |
Matrix_297 | TCP15 | Not available | Upstream | -532 |
| | | Upstream | -529 |
Matrix_315 | MYB111 | Not available | Upstream | -270 |
Matrix_321 | HRD | Not available | Upstream | -308 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -312 |
| | | Upstream | -309 |
Matrix_333 | GATA3 | Not available | Upstream | -286 |
Matrix_334 | AT3G23230 | Not available | Upstream | -310 |
| | | Upstream | -307 |
Matrix_343 | AT2G33710 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_348 | AT5G51910 | Not available | Upstream | -531 |
| | | Upstream | -530 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -312 |
| | | Upstream | -309 |
Matrix_360 | ORA59 | Not available | Upstream | -308 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -311 |
| | | Upstream | -309 |
| | | Upstream | -308 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_378 | ATERF1 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_396 | AP3 | Not available | Upstream | -182 |
Matrix_40 | TCP2 | Not available | Upstream | -530 |
Matrix_406 | ATERF-7 | Not available | Upstream | -313 |
| | | Upstream | -310 |
Matrix_409 | DEAR3 | Not available | Upstream | -309 |
Matrix_414 | AGL15 | Not available | Upstream | -270 |
| | | Upstream | -265 |
| | | Upstream | -83 |
| | | Upstream | -78 |
Matrix_42 | AT2G45680 | Not available | Upstream | -531 |
| | | Upstream | -530 |
Matrix_421 | GLK1 | Not available | Upstream | -286 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -307 |
Matrix_433 | ATERF1 | Not available | Upstream | -312 |
Matrix_448 | ATERF6 | Not available | Upstream | -312 |
Matrix_45 | DRN | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -309 |
Matrix_462 | ATERF-8 | Not available | Upstream | -313 |
| | | Upstream | -310 |
Matrix_473 | RRTF1 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_484 | ATERF13 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Matrix_496 | ATMYB15 | Not available | Upstream | -270 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -311 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -312 |
| | | Upstream | -309 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -310 |
| | | Upstream | -307 |
Matrix_507 | TCP3 | Not available | Upstream | -529 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -270 |
Matrix_517 | ERF12 | Not available | Upstream | -308 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -540 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -309 |
Matrix_74 | LFY | Not available | Upstream | -21 |
Matrix_82 | TCP17 | Not available | Upstream | -528 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -310 |
| | | Upstream | -307 |
Matrix_91 | CRF3 | Not available | Upstream | -311 |
| | | Upstream | -308 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -1175 |
| | | Upstream | -19 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -351 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -354 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -355 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -268 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -534 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -320 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -28 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -295 |
Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | Upstream | -273 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -481 |
| | | Upstream | -353 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -307 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -27 |
Motif_332 | SV40COREENHAN | SV40 core enhancer; Similar sequences found in rbcS genes | Upstream | -274 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -539 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -86 |
Motif_348 | WBBOXPCWRKY1 | WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in Arabidopsis | Upstream | -67 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -180 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -294 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -289 |
| | | Upstream | -280 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -22 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -540 |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Upstream | -47 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -540 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -538 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -70 |
Motif_543 | TATCCACHVAL21 | TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response | Upstream | -273 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -1172 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -538 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -527 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -63 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -21 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -273 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -534 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -482 |
| | | Upstream | -361 |
| | | Upstream | -360 |
| | | Upstream | -348 |
| | | Upstream | -39 |
| | | Upstream | -32 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -361 |
| | | Upstream | -348 |
| | | Upstream | -39 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -50 |