Matrix_101 | ERF5 | Not available | Upstream | -233 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_104 | PI | Not available | Upstream | -741 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -741 |
Matrix_109 | GBF3 | Not available | Upstream | -741 |
| | | Upstream | -743 |
Matrix_113 | ABI5 | Not available | Upstream | -741 |
Matrix_119 | RRTF1 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_120 | BEE2 | Not available | Upstream | -742 |
Matrix_129 | ABF1 | Not available | Upstream | -742 |
Matrix_134 | ABF1 | Not available | Upstream | -742 |
Matrix_138 | RRTF1 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -742 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -743 |
Matrix_146 | ORA47 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -738 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -252 |
| | | Upstream | -253 |
Matrix_156 | POC1 | Not available | Upstream | -741 |
| | | Upstream | -743 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -251 |
Matrix_190 | ATERF1 | Not available | Upstream | -234 |
| | | Upstream | -252 |
| | | Upstream | -253 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -739 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -739 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -742 |
Matrix_214 | AP1 | Not available | Upstream | -740 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -739 |
Matrix_224 | ERF1 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_233 | MYC3 | Not available | Upstream | -743 |
Matrix_234 | RAP2.3 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -252 |
| | | Upstream | -253 |
Matrix_247 | PIF3 | Not available | Upstream | -742 |
Matrix_252 | RAP2.6 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_261 | ATERF-1 | Not available | Upstream | -233 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_272 | DEAR4 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_287 | ERF2 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_288 | RAP2.3 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_295 | ERF1 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_296 | GBF2 | Not available | Upstream | -742 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -742 |
| | | Upstream | -743 |
Matrix_301 | PIL5 | Not available | Upstream | -737 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -740 |
Matrix_321 | HRD | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_331 | GBF1 | Not available | Upstream | -741 |
| | | Upstream | -743 |
Matrix_332 | SPT;ALC | Not available | Upstream | -742 |
| | | Upstream | -743 |
Matrix_334 | AT3G23230 | Not available | Upstream | -237 |
| | | Upstream | -252 |
| | | Upstream | -253 |
Matrix_338 | AP2 | Not available | Upstream | -739 |
Matrix_343 | AT2G33710 | Not available | Upstream | -233 |
| | | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_345 | POC1 | Not available | Upstream | -739 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_356 | PRR5 | Not available | Upstream | -739 |
Matrix_360 | ORA59 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_363 | RAP2.3 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_378 | ATERF1 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_389 | ILR3 | Not available | Upstream | -742 |
Matrix_401 | MYB55 | Not available | Upstream | -254 |
Matrix_403 | BZR1 | Not available | Upstream | -740 |
Matrix_405 | DREB2C | Not available | Upstream | -255 |
Matrix_406 | ATERF-7 | Not available | Upstream | -234 |
| | | Upstream | -249 |
| | | Upstream | -250 |
Matrix_409 | DEAR3 | Not available | Upstream | -250 |
| | | Upstream | -251 |
Matrix_414 | AGL15 | Not available | Upstream | -72 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -237 |
| | | Upstream | -252 |
| | | Upstream | -253 |
Matrix_443 | AGL15 | Not available | Upstream | -740 |
Matrix_45 | DRN | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_452 | MYB46 | Not available | Upstream | -254 |
Matrix_462 | ATERF-8 | Not available | Upstream | -234 |
| | | Upstream | -249 |
| | | Upstream | -250 |
Matrix_473 | RRTF1 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_48 | PI | Not available | Upstream | -70 |
| | | Upstream | -71 |
Matrix_484 | ATERF13 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -235 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -252 |
| | | Upstream | -253 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -251 |
Matrix_517 | ERF12 | Not available | Upstream | -251 |
| | | Upstream | -252 |
Matrix_55 | PIF3 | Not available | Upstream | -741 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -250 |
| | | Upstream | -251 |
Matrix_7 | PIF4 | Not available | Upstream | -742 |
Matrix_84 | AtGRF6 | Not available | Upstream | -253 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -237 |
| | | Upstream | -252 |
| | | Upstream | -253 |
Matrix_91 | CRF3 | Not available | Upstream | -236 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -67 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -78 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -741 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -741 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -236 |
| | | Upstream | -252 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -743 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -56 |
| | | Upstream | -474 |
| | | Upstream | -573 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -742 |
| | | Upstream | -743 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -742 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -741 |
Motif_599 | LREBOXIIPCCHS1;HY5 | BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -741 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -741 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -740 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -68 |