View conserved binding sites


Gene
ST01G041950
Description
NAC domain protein IPR003441 (AHRD V1 ***- B9GZS1_POPTR); contains Interpro domain(s) IPR003441 No apical meristem (NAM) protein
Alias
gene:Sotub01g041950;Sotub01g041950.1.1;Sotub01g041950;Sotub01g041950.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-233
Upstream-251
Upstream-252
Matrix_104PINot availableUpstream-741
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-741
Matrix_109GBF3Not availableUpstream-741
Upstream-743
Matrix_113ABI5Not availableUpstream-741
Matrix_119RRTF1Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_120BEE2Not availableUpstream-742
Matrix_129ABF1Not availableUpstream-742
Matrix_134ABF1Not availableUpstream-742
Matrix_138RRTF1Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_14ZCW32;AT5G62610Not availableUpstream-742
Matrix_145GBF4;AT5G44080Not availableUpstream-743
Matrix_146ORA47Not availableUpstream-251
Upstream-252
Matrix_147ERF3;AT1G80580Not availableUpstream-251
Upstream-252
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-738
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-252
Upstream-253
Matrix_156POC1Not availableUpstream-741
Upstream-743
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-251
Matrix_190ATERF1Not availableUpstream-234
Upstream-252
Upstream-253
Matrix_192FHY3/FAR1Not availableUpstream-739
Matrix_194HYH;HY5Not availableUpstream-739
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-742
Matrix_214AP1Not availableUpstream-740
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-739
Matrix_224ERF1Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_233MYC3Not availableUpstream-743
Matrix_234RAP2.3Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_243RAP2.12;RAP2.2Not availableUpstream-252
Upstream-253
Matrix_247PIF3Not availableUpstream-742
Matrix_252RAP2.6Not availableUpstream-251
Upstream-252
Matrix_261ATERF-1Not availableUpstream-233
Upstream-251
Upstream-252
Matrix_272DEAR4Not availableUpstream-251
Upstream-252
Matrix_287ERF2Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_288RAP2.3Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_295ERF1Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_296GBF2Not availableUpstream-742
Matrix_300bZIP68;bZIP16Not availableUpstream-742
Upstream-743
Matrix_301PIL5Not availableUpstream-737
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-740
Matrix_321HRDNot availableUpstream-251
Upstream-252
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_331GBF1Not availableUpstream-741
Upstream-743
Matrix_332SPT;ALCNot availableUpstream-742
Upstream-743
Matrix_334AT3G23230Not availableUpstream-237
Upstream-252
Upstream-253
Matrix_338AP2Not availableUpstream-739
Matrix_343AT2G33710Not availableUpstream-233
Upstream-236
Upstream-251
Upstream-252
Matrix_345POC1Not availableUpstream-739
Matrix_355ERF10;ERF11Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_356PRR5Not availableUpstream-739
Matrix_360ORA59Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_363RAP2.3Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-251
Upstream-252
Matrix_378ATERF1Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_389ILR3Not availableUpstream-742
Matrix_401MYB55Not availableUpstream-254
Matrix_403BZR1Not availableUpstream-740
Matrix_405DREB2CNot availableUpstream-255
Matrix_406ATERF-7Not availableUpstream-234
Upstream-249
Upstream-250
Matrix_409DEAR3Not availableUpstream-250
Upstream-251
Matrix_414AGL15Not availableUpstream-72
Matrix_426CRF1;CRF2Not availableUpstream-237
Upstream-252
Upstream-253
Matrix_443AGL15Not availableUpstream-740
Matrix_45DRNNot availableUpstream-251
Upstream-252
Matrix_452MYB46Not availableUpstream-254
Matrix_462ATERF-8Not availableUpstream-234
Upstream-249
Upstream-250
Matrix_473RRTF1Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_48PINot availableUpstream-70
Upstream-71
Matrix_484ATERF13Not availableUpstream-236
Upstream-251
Upstream-252
Matrix_493AT1G22985;AT1G71130Not availableUpstream-251
Upstream-252
Matrix_50ATERF14;AT5G43410Not availableUpstream-235
Upstream-250
Upstream-251
Matrix_506DRNL;ATERF-4Not availableUpstream-252
Upstream-253
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-251
Matrix_517ERF12Not availableUpstream-251
Upstream-252
Matrix_55PIF3Not availableUpstream-741
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-250
Upstream-251
Matrix_7PIF4Not availableUpstream-742
Matrix_84AtGRF6Not availableUpstream-253
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-237
Upstream-252
Upstream-253
Matrix_91CRF3Not availableUpstream-236
Upstream-251
Upstream-252
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-67
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-78
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-741
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-741
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-236
Upstream-252
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-743
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-56
Upstream-474
Upstream-573
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-742
Upstream-743
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-742
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-741
Motif_599LREBOXIIPCCHS1;HY5BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-741
Motif_638ABRE binding site motifNot availableUpstream-741
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-740
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-68