View conserved binding sites


Gene
ST01G040990
Description
Serine hydroxymethyltransferase (AHRD V1 ***- A9PL12_POPTM); contains Interpro domain(s) IPR001085 Serine hydroxymethyltransferase
Alias
gene:Sotub01g040990;Sotub01g040990.1.1;Sotub01g040990;Sotub01g040990.1.1
Binding siteNameDescriptionLocationPosition
Matrix_224ERF1Not availableUpstream-130
Upstream-127
Matrix_234RAP2.3Not availableUpstream-128
Matrix_252RAP2.6Not availableUpstream-128
Matrix_298RAV1Not availableUpstream-136
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-127
Matrix_343AT2G33710Not availableUpstream-128
Matrix_355ERF10;ERF11Not availableUpstream-127
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-136
Matrix_360ORA59Not availableUpstream-129
Matrix_378ATERF1Not availableUpstream-128
Matrix_406ATERF-7Not availableUpstream-129
Matrix_413RAV1Not availableUpstream-136
Matrix_426CRF1;CRF2Not availableUpstream-127
Matrix_453EIL3Not availableUpstream-314
Matrix_473RRTF1Not availableUpstream-128
Matrix_489RAV1Not availableUpstream-134
Matrix_493AT1G22985;AT1G71130Not availableUpstream-127
Matrix_5AT5G51190;ERF104Not availableUpstream-129
Matrix_506DRNL;ATERF-4Not availableUpstream-127
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-127
Matrix_83PRR5Not availableUpstream-290
Matrix_91CRF3Not availableUpstream-127
Motif_145MYCATERD1MYC recognition sequence (from -466 to -461) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis; NAC protein bound specifically to the CATGTG motif; NAC protein bound specifically to the CATGTG motifUpstream-1628
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1628
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-133
Upstream-97
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-128
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyUpstream-104
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-138
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-137
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-122
Upstream-119
Upstream-116
Motif_447AtMYC2 BS in RD22;PIF4Binding site for MYC (rd22BP1) in Arabidopsis dehydration-resposive gene, rd22; MYC binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -200 of rd22 gene; Also MYB at ca. -141 of rd22 gene; See also MYBATRD22; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1628
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-329
Motif_637SARD1;CBP60gControl of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factorsUpstream-326
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1633
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-180