View conserved binding sites


Gene
ST01G039410
Description
No description available
Alias
gene:Sotub01g039410;Sotub01g039410.1.1;Sotub01g039410;Sotub01g039410.1.1
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-53
Upstream-56
Matrix_138RRTF1Not availableUpstream-54
Upstream-124
Matrix_146ORA47Not availableUpstream-55
Matrix_147ERF3;AT1G80580Not availableUpstream-51
Matrix_151ASIL1Not availableUpstream-50
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-52
Matrix_224ERF1Not availableUpstream-50
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-49
Matrix_261ATERF-1Not availableUpstream-51
Matrix_272DEAR4Not availableUpstream-55
Matrix_285DDF1Not availableUpstream-28
Matrix_292FTQ4Not availableUpstream-29
Matrix_308INONot availableUpstream-48
Matrix_312ARF11;MP;ARF6;IAA21;ARF8;ARF4Not availableUpstream-28
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-50
Upstream-51
Upstream-54
Upstream-124
Matrix_343AT2G33710Not availableUpstream-52
Upstream-55
Upstream-123
Matrix_355ERF10;ERF11Not availableUpstream-50
Upstream-51
Upstream-54
Upstream-124
Matrix_406ATERF-7Not availableUpstream-49
Matrix_409DEAR3Not availableUpstream-50
Matrix_418KNAT6;KNAT2Not availableUpstream-49
Matrix_448ATERF6Not availableUpstream-50
Matrix_45DRNNot availableUpstream-51
Upstream-52
Upstream-55
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-50
Matrix_462ATERF-8Not availableUpstream-49
Upstream-50
Upstream-53
Matrix_493AT1G22985;AT1G71130Not availableUpstream-51
Matrix_50ATERF14;AT5G43410Not availableUpstream-50
Matrix_506DRNL;ATERF-4Not availableUpstream-52
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-28
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-50
Matrix_68AtMYB77More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J 14: 273-84Upstream-44
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-56
Matrix_91CRF3Not availableUpstream-51
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-45
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-55
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-51
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-30
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-31
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-31
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-174
Upstream-176