View conserved binding sites


Gene
ST01G039200
Description
BHLH transcription factor (AHRD V1 *-*- B6TXR4_MAIZE); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding
Alias
gene:Sotub01g039200;Sotub01g039200.1.1;Sotub01g039200;Sotub01g039200.1.1
Binding siteNameDescriptionLocationPosition
Matrix_110ATABI4;AT3G57600Not availableUpstream-849
Matrix_138RRTF1Not availableUpstream-850
Matrix_146ORA47Not availableUpstream-851
Matrix_147ERF3;AT1G80580Not availableUpstream-849
Matrix_224ERF1Not availableUpstream-850
Matrix_261ATERF-1Not availableUpstream-850
Matrix_272DEAR4Not availableUpstream-851
Matrix_295ERF1Not availableUpstream-849
Matrix_334AT3G23230Not availableUpstream-850
Matrix_360ORA59Not availableUpstream-849
Matrix_363RAP2.3Not availableUpstream-850
Matrix_378ATERF1Not availableUpstream-851
Matrix_406ATERF-7Not availableUpstream-849
Matrix_409DEAR3Not availableUpstream-850
Matrix_426CRF1;CRF2Not availableUpstream-850
Matrix_45DRNNot availableUpstream-849
Matrix_462ATERF-8Not availableUpstream-849
Matrix_484ATERF13Not availableUpstream-849
Matrix_50ATERF14;AT5G43410Not availableUpstream-850
Matrix_506DRNL;ATERF-4Not availableUpstream-850
Matrix_517ERF12Not availableUpstream-849
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-850
Matrix_91CRF3Not availableUpstream-850
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-872
Upstream-201
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-848
Motif_348WBBOXPCWRKY1WB box; WRKY proteins bind specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box; Found in amylase gene in sweet potato, alpha-Amy2 genes in wheat, barley, and wild oat, PR1 gene in parsley, and a transcription factor gene in ArabidopsisUpstream-269
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-852
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-872
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-870