View conserved binding sites


Gene
ST01G036580
Description
Seryl-tRNA synthetase (AHRD V1 ***- D7M641_ARALY); contains Interpro domain(s) IPR002317 Seryl-tRNA synthetase, class IIa
Alias
gene:Sotub01g036580;Sotub01g036580.1.1;Sotub01g036580;Sotub01g036580.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-150
Upstream-147
Matrix_110ATABI4;AT3G57600Not availableUpstream-151
Upstream-148
Matrix_119RRTF1Not availableUpstream-149
Upstream-146
Matrix_138RRTF1Not availableUpstream-149
Upstream-146
Matrix_146ORA47Not availableUpstream-150
Upstream-147
Matrix_147ERF3;AT1G80580Not availableUpstream-148
Upstream-145
Matrix_151ASIL1Not availableUpstream-149
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-149
Upstream-146
Matrix_190ATERF1Not availableUpstream-151
Upstream-150
Upstream-148
Upstream-147
Matrix_224ERF1Not availableUpstream-149
Upstream-146
Matrix_234RAP2.3Not availableUpstream-151
Upstream-150
Upstream-147
Matrix_243RAP2.12;RAP2.2Not availableUpstream-149
Upstream-146
Matrix_252RAP2.6Not availableUpstream-151
Upstream-150
Upstream-148
Upstream-147
Matrix_261ATERF-1Not availableUpstream-149
Upstream-146
Matrix_272DEAR4Not availableUpstream-150
Upstream-147
Matrix_287ERF2Not availableUpstream-150
Upstream-147
Matrix_288RAP2.3Not availableUpstream-149
Upstream-146
Matrix_295ERF1Not availableUpstream-148
Upstream-145
Matrix_321HRDNot availableUpstream-149
Upstream-146
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-149
Upstream-146
Matrix_334AT3G23230Not availableUpstream-149
Upstream-146
Matrix_343AT2G33710Not availableUpstream-150
Upstream-147
Matrix_344ATERF15;AT4G18450Not availableUpstream-148
Upstream-145
Matrix_355ERF10;ERF11Not availableUpstream-149
Upstream-146
Matrix_360ORA59Not availableUpstream-148
Upstream-145
Matrix_363RAP2.3Not availableUpstream-149
Upstream-146
Matrix_374AT5G07580;AT5G61590Not availableUpstream-149
Upstream-148
Upstream-146
Upstream-145
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-149
Upstream-146
Matrix_378ATERF1Not availableUpstream-150
Upstream-147
Matrix_396AP3Not availableUpstream-230
Matrix_405DREB2CNot availableUpstream-148
Matrix_406ATERF-7Not availableUpstream-148
Matrix_409DEAR3Not availableUpstream-149
Upstream-146
Matrix_426CRF1;CRF2Not availableUpstream-149
Upstream-146
Matrix_448ATERF6Not availableUpstream-149
Upstream-146
Matrix_45DRNNot availableUpstream-148
Upstream-145
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-149
Upstream-146
Matrix_462ATERF-8Not availableUpstream-148
Matrix_473RRTF1Not availableUpstream-151
Upstream-150
Upstream-147
Matrix_484ATERF13Not availableUpstream-148
Upstream-145
Matrix_493AT1G22985;AT1G71130Not availableUpstream-149
Upstream-146
Matrix_50ATERF14;AT5G43410Not availableUpstream-149
Upstream-146
Matrix_506DRNL;ATERF-4Not availableUpstream-149
Upstream-146
Matrix_517ERF12Not availableUpstream-148
Upstream-145
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-149
Upstream-146
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-149
Upstream-146
Matrix_91CRF3Not availableUpstream-149
Upstream-146
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron1996
Intron1998
Intron2000
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-147
Upstream-144
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-228
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron1996
Intron1998
Intron2000
Intron2002
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron1996
Intron1998
Intron2000
Intron2002
Intron2004
Intron2006
Intron2008