View conserved binding sites


Gene
ST01G028970
Description
Transcription factor (AHRD V1 **-- D7LLP9_ARALY); contains Interpro domain(s) IPR006578 MADF domain
Alias
gene:Sotub01g028970;Sotub01g028970.1.1;Sotub01g028970;Sotub01g028970.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-139
Upstream-136
Matrix_110ATABI4;AT3G57600Not availableUpstream-140
Upstream-137
Matrix_119RRTF1Not availableUpstream-138
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-132
Matrix_138RRTF1Not availableUpstream-138
Matrix_146ORA47Not availableUpstream-139
Matrix_147ERF3;AT1G80580Not availableUpstream-137
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-137
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-138
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-132
Matrix_187CDC5Not availableUpstream-254
Matrix_190ATERF1Not availableUpstream-140
Upstream-137
Matrix_224ERF1Not availableUpstream-141
Upstream-138
Matrix_227AT1G64620Not availableUpstream-107
Matrix_234RAP2.3Not availableUpstream-139
Matrix_243RAP2.12;RAP2.2Not availableUpstream-138
Matrix_244DREB2CNot availableUpstream-138
Matrix_252RAP2.6Not availableUpstream-139
Matrix_261ATERF-1Not availableUpstream-138
Upstream-135
Matrix_277RAP2.6Not availableUpstream-138
Matrix_287ERF2Not availableUpstream-139
Matrix_288RAP2.3Not availableUpstream-138
Matrix_295ERF1Not availableUpstream-137
Matrix_297TCP15Not availableUpstream-300
Matrix_321HRDNot availableUpstream-138
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-138
Matrix_334AT3G23230Not availableUpstream-138
Matrix_343AT2G33710Not availableUpstream-139
Upstream-136
Matrix_349CDC5Not availableUpstream-254
Matrix_355ERF10;ERF11Not availableUpstream-138
Matrix_360ORA59Not availableUpstream-137
Matrix_363RAP2.3Not availableUpstream-138
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-131
Matrix_374AT5G07580;AT5G61590Not availableUpstream-138
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-138
Matrix_378ATERF1Not availableUpstream-139
Matrix_385DEAR4Not availableUpstream-138
Matrix_394DREB_UNot availableUpstream-138
Matrix_401MYB55Not availableUpstream-132
Matrix_406ATERF-7Not availableUpstream-137
Matrix_409DEAR3Not availableUpstream-141
Upstream-138
Matrix_426CRF1;CRF2Not availableUpstream-138
Matrix_45DRNNot availableUpstream-137
Matrix_452MYB46Not availableUpstream-132
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-138
Matrix_455MYB111Not availableUpstream-132
Matrix_462ATERF-8Not availableUpstream-137
Matrix_473RRTF1Not availableUpstream-139
Matrix_48PINot availableUpstream-101
Matrix_484ATERF13Not availableUpstream-137
Matrix_493AT1G22985;AT1G71130Not availableUpstream-138
Matrix_496ATMYB15Not availableUpstream-132
Matrix_50ATERF14;AT5G43410Not availableUpstream-138
Matrix_506DRNL;ATERF-4Not availableUpstream-138
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-132
Matrix_517ERF12Not availableUpstream-137
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-141
Upstream-138
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-138
Matrix_91CRF3Not availableUpstream-138
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-246
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1626
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-246
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-136
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-250
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-239
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-247
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-1626
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-105
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-245
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-248
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-103
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-198