Matrix_101 | ERF5 | Not available | Upstream | -139 |
| | | Upstream | -136 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -140 |
| | | Upstream | -137 |
Matrix_119 | RRTF1 | Not available | Upstream | -138 |
Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -132 |
Matrix_138 | RRTF1 | Not available | Upstream | -138 |
Matrix_146 | ORA47 | Not available | Upstream | -139 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -137 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -137 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -138 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -132 |
Matrix_187 | CDC5 | Not available | Upstream | -254 |
Matrix_190 | ATERF1 | Not available | Upstream | -140 |
| | | Upstream | -137 |
Matrix_224 | ERF1 | Not available | Upstream | -141 |
| | | Upstream | -138 |
Matrix_227 | AT1G64620 | Not available | Upstream | -107 |
Matrix_234 | RAP2.3 | Not available | Upstream | -139 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -138 |
Matrix_244 | DREB2C | Not available | Upstream | -138 |
Matrix_252 | RAP2.6 | Not available | Upstream | -139 |
Matrix_261 | ATERF-1 | Not available | Upstream | -138 |
| | | Upstream | -135 |
Matrix_277 | RAP2.6 | Not available | Upstream | -138 |
Matrix_287 | ERF2 | Not available | Upstream | -139 |
Matrix_288 | RAP2.3 | Not available | Upstream | -138 |
Matrix_295 | ERF1 | Not available | Upstream | -137 |
Matrix_297 | TCP15 | Not available | Upstream | -300 |
Matrix_321 | HRD | Not available | Upstream | -138 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -138 |
Matrix_334 | AT3G23230 | Not available | Upstream | -138 |
Matrix_343 | AT2G33710 | Not available | Upstream | -139 |
| | | Upstream | -136 |
Matrix_349 | CDC5 | Not available | Upstream | -254 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -138 |
Matrix_360 | ORA59 | Not available | Upstream | -137 |
Matrix_363 | RAP2.3 | Not available | Upstream | -138 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -131 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -138 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -138 |
Matrix_378 | ATERF1 | Not available | Upstream | -139 |
Matrix_385 | DEAR4 | Not available | Upstream | -138 |
Matrix_394 | DREB_U | Not available | Upstream | -138 |
Matrix_401 | MYB55 | Not available | Upstream | -132 |
Matrix_406 | ATERF-7 | Not available | Upstream | -137 |
Matrix_409 | DEAR3 | Not available | Upstream | -141 |
| | | Upstream | -138 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -138 |
Matrix_45 | DRN | Not available | Upstream | -137 |
Matrix_452 | MYB46 | Not available | Upstream | -132 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -138 |
Matrix_455 | MYB111 | Not available | Upstream | -132 |
Matrix_462 | ATERF-8 | Not available | Upstream | -137 |
Matrix_473 | RRTF1 | Not available | Upstream | -139 |
Matrix_48 | PI | Not available | Upstream | -101 |
Matrix_484 | ATERF13 | Not available | Upstream | -137 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -138 |
Matrix_496 | ATMYB15 | Not available | Upstream | -132 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -138 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -138 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -132 |
Matrix_517 | ERF12 | Not available | Upstream | -137 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -141 |
| | | Upstream | -138 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -138 |
Matrix_91 | CRF3 | Not available | Upstream | -138 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -246 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -1626 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -246 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -136 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -250 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -239 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -247 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -1626 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -105 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -245 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -248 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -103 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -198 |