View conserved binding sites


Gene
ST01G015250
Description
Pumilio family protein (AHRD V1 *-*- D8U4V9_VOLCA); contains Interpro domain(s) IPR011989 Armadillo-like helical
Alias
gene:Sotub01g015250;Sotub01g015250.1.1;Sotub01g015250;Sotub01g015250.1.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-870
Matrix_110ATABI4;AT3G57600Not availableUpstream-868
Matrix_123FUSCA3Not availableUpstream-1092
Matrix_146ORA47Not availableUpstream-870
Matrix_147ERF3;AT1G80580Not availableUpstream-870
Upstream-871
Matrix_184AGL15Not availableUpstream-948
Matrix_224ERF1Not availableUpstream-869
Matrix_234RAP2.3Not availableUpstream-870
Matrix_261ATERF-1Not availableUpstream-870
Matrix_269FHY3/FAR1Not availableUpstream-1729
Matrix_272DEAR4Not availableUpstream-870
Matrix_287ERF2Not availableUpstream-870
Matrix_288RAP2.3Not availableUpstream-869
Matrix_295ERF1Not availableUpstream-870
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-869
Matrix_334AT3G23230Not availableUpstream-871
Matrix_343AT2G33710Not availableUpstream-870
Matrix_355ERF10;ERF11Not availableUpstream-869
Matrix_360ORA59Not availableUpstream-870
Matrix_363RAP2.3Not availableUpstream-869
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-1704
Upstream-1713
Matrix_378ATERF1Not availableUpstream-870
Matrix_406ATERF-7Not availableUpstream-868
Matrix_409DEAR3Not availableUpstream-869
Matrix_426CRF1;CRF2Not availableUpstream-871
Matrix_45DRNNot availableUpstream-870
Upstream-871
Matrix_462ATERF-8Not availableUpstream-868
Matrix_48PINot availableUpstream-1720
Matrix_484ATERF13Not availableUpstream-870
Upstream-871
Matrix_50ATERF14;AT5G43410Not availableUpstream-869
Matrix_506DRNL;ATERF-4Not availableUpstream-871
Upstream-872
Matrix_517ERF12Not availableUpstream-870
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-869
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-871
Matrix_91CRF3Not availableUpstream-870
Motif_127SBOXATRBCSS-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5Upstream-862
Motif_263RYREPEATVFLEB4;ABI3RY repeat motif; quantitative seed expression; Gene: Vicia faba LeB4; Soybean glycinin (Gy2); other dicot and monocot seed protein genes; Sph box found in rice Osem gene promoter; Binding site of Arabidopsis B3-domain-containing transcription factor FUS3; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption; FUS3 protein physically interact with two RY elements present in the AtGA3ox promoter;RY repeats are conserved in the 5 prime-flanking region of legume seed protein genes. Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene productUpstream-1095
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-871
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-498
Motif_490PROLAMINBOXOSGLUB1Prolamine box found in the rice GluB-1 gene promoter; Involved in quantitative regulation of the GluB-1 geneUpstream-215
Motif_518SPHCOREZMC1Core of Sph element; Core motif of Sph element in maize C1 gene to which maize VP1 (viviparous 1) protein binds; VP1-responsive element; see RYREPEAT4; VP1 gene is specifically required for expression of the maturation program in seed development; VP1 is a novel transcription factor possibly involved in potentiation of a seed-specific hormone responseUpstream-1093
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-498
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-679
Upstream-1001
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-908
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-635
Upstream-820
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-987