View conserved binding sites


Gene
SL10G005530
Description
Nuclear cap-binding protein subunit 1 (AHRD V1 *-** B0X1G0_CULQU)%3B contains Interpro domain(s) IPR016024 Armadillo-type fold
Alias
Solyc10g005530.2.1;Solyc10g005530.2.1;Solyc10g005530.2;Solyc10g005530.2
Binding siteNameDescriptionLocationPosition
Matrix_396AP3Not availableIntron9018
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron5101
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-268
Upstream-771
Upstream-845
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron5100
Intron5098
Intron5096
Intron5094