View conserved binding sites


Gene
SL09G082700
Description
Early light-induced protein 7 (AHRD V1 ***- B2BJD6_RHOCT)
Alias
Solyc09g082700.2;Solyc09g082700.2.1;Solyc09g082700.2.1;Solyc09g082700.2
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-191
Upstream-755
Matrix_109GBF3Not availableUpstream-193
Matrix_113ABI5Not availableUpstream-191
Upstream-757
Matrix_122ABF1;AREB2Not availableUpstream-756
Matrix_129ABF1Not availableUpstream-192
Upstream-756
Matrix_133DYT1Not availableUpstream-187
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-188
Matrix_153AP2Not availableUpstream-191
Matrix_156POC1Not availableUpstream-193
Upstream-755
Upstream-757
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-756
Matrix_216TCP16Not availableUpstream-1057
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-149
Upstream-150
Matrix_24POC1Not availableUpstream-188
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-1057
Matrix_301PIL5Not availableUpstream-187
Upstream-757
Matrix_331GBF1Not availableUpstream-193
Matrix_359FLCNot availableUpstream-754
Matrix_403BZR1Not availableUpstream-190
Upstream-754
Matrix_438AtbZIP63Not availableUpstream-756
Matrix_488ABF1Not availableUpstream-748
Matrix_55PIF3Not availableUpstream-191
Upstream-755
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-757
Matrix_64PIF5Not availableUpstream-193
Upstream-757
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-193
Upstream-757
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-193
Upstream-756
Upstream-1045
Motif_244ABRE-like binding site motifNot availableUpstream-152
Upstream-193
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-137
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-154
Upstream-193
Upstream-757
Motif_34LECPLEACS2Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 geneUpstream-141
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-142
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-193
Upstream-756
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-151
Upstream-534
Upstream-786
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-137
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-152
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-169
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-152
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-138
Motif_638ABRE binding site motifNot availableUpstream-152