View conserved binding sites


Gene
SL06G065210
Description
Neutral invertase like protein (AHRD V1 ***- Q67XD9_ARATH)%3B contains Interpro domain(s) IPR006937 Plant neutral invertase
Alias
Solyc06g065210.2.1;Solyc06g065210.2;Solyc06g065210.2.1;Solyc06g065210.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1594
Upstream-1596
Matrix_110ATABI4;AT3G57600Not availableUpstream-1591
Matrix_146ORA47Not availableUpstream-1594
Matrix_147ERF3;AT1G80580Not availableUpstream-1596
Upstream-1597
Matrix_151ASIL1Not availableUpstream-1587
Upstream-1588
Upstream-1595
Upstream-1596
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1595
Upstream-1596
Upstream-1597
Upstream-1598
Matrix_190ATERF1Not availableUpstream-1594
Matrix_234RAP2.3Not availableUpstream-1594
Matrix_243RAP2.12;RAP2.2Not availableUpstream-1595
Matrix_252RAP2.6Not availableUpstream-1594
Upstream-1595
Matrix_261ATERF-1Not availableUpstream-1595
Matrix_269FHY3/FAR1Not availableUpstream-1482
Matrix_272DEAR4Not availableUpstream-1594
Matrix_287ERF2Not availableUpstream-1594
Upstream-1596
Matrix_288RAP2.3Not availableUpstream-1595
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1595
Matrix_334AT3G23230Not availableUpstream-1595
Matrix_343AT2G33710Not availableUpstream-1594
Matrix_344ATERF15;AT4G18450Not availableUpstream-1596
Upstream-1597
Matrix_355ERF10;ERF11Not availableUpstream-1595
Matrix_360ORA59Not availableUpstream-1596
Matrix_363RAP2.3Not availableUpstream-1595
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1595
Upstream-1596
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1595
Matrix_378ATERF1Not availableUpstream-1594
Matrix_406ATERF-7Not availableUpstream-1594
Upstream-1595
Upstream-1596
Upstream-1597
Matrix_409DEAR3Not availableUpstream-1595
Matrix_433ATERF1Not availableUpstream-1595
Matrix_448ATERF6Not availableUpstream-1595
Upstream-1596
Matrix_45DRNNot availableUpstream-1596
Upstream-1597
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-1595
Matrix_462ATERF-8Not availableUpstream-1594
Upstream-1595
Upstream-1596
Upstream-1597
Matrix_473RRTF1Not availableUpstream-1594
Matrix_484ATERF13Not availableUpstream-1596
Matrix_49FHY3/FAR1Not availableUpstream-1590
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1595
Upstream-1596
Matrix_5AT5G51190;ERF104Not availableUpstream-1596
Upstream-1597
Matrix_50ATERF14;AT5G43410Not availableUpstream-1595
Matrix_506DRNL;ATERF-4Not availableUpstream-1595
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1595
Matrix_59AT4G00238;AT4G00250Not availableUpstream-1595
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1595
Matrix_91CRF3Not availableUpstream-1595
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationDownstream3825
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-1539
Upstream-1612
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-143
Upstream-361
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteDownstream3840
Upstream-1655
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1613
Upstream-1651
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-1651
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1618