View conserved binding sites


Gene
SL03G093370
Description
Protein DYAD (AHRD V1 ***- DYAD_ARATH)
Alias
Solyc03g093370.1.1;Solyc03g093370.1;Solyc03g093370.1.1;Solyc03g093370.1
Binding siteNameDescriptionLocationPosition
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1390
Upstream-1391
Matrix_120BEE2Not availableUpstream-1391
Upstream-1392
Matrix_122ABF1;AREB2Not availableUpstream-1391
Upstream-1392
Matrix_14ZCW32;AT5G62610Not availableUpstream-1391
Upstream-1392
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1388
Matrix_153AP2Not availableUpstream-1390
Matrix_156POC1Not availableUpstream-1392
Upstream-1393
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-1391
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron84
Intron66
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-1391
Upstream-1392
Matrix_27ATAIB;ATNIG1Not availableUpstream-1393
Matrix_301PIL5Not availableUpstream-1386
Upstream-1387
Upstream-1393
Matrix_320MYC4Not availableUpstream-1392
Matrix_323BIM3Not availableUpstream-1391
Matrix_330MYC2;TT8Not availableUpstream-1391
Matrix_332SPT;ALCNot availableUpstream-1391
Upstream-1392
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-1392
Matrix_369AT2G18300Not availableUpstream-1389
Upstream-1390
Upstream-1392
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-395
Matrix_389ILR3Not availableUpstream-1391
Upstream-1392
Matrix_403BZR1Not availableUpstream-1390
Matrix_427ZAT14Not availableUpstream-457
Matrix_438AtbZIP63Not availableUpstream-1389
Matrix_449BIM2Not availableUpstream-1391
Upstream-1392
Matrix_465MYC4Not availableUpstream-1391
Matrix_48PINot availableUpstream-1326
Matrix_480BES1Not availableUpstream-1390
Upstream-1391
Matrix_49FHY3/FAR1Not availableIntron69
Matrix_53MYC3Not availableUpstream-1394
Matrix_64PIF5Not availableUpstream-1392
Matrix_7PIF4Not availableUpstream-1393
Upstream-1394
Matrix_77PRR5Not availableUpstream-1391
Matrix_80BIM1Not availableUpstream-1390
Upstream-1391
Upstream-1392
Upstream-1393
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-1392
Upstream-1394
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1393
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1393
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-1393
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-1393
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-1387
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-18
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-1394
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1255
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron583
Intron581
Upstream-32
Upstream-53
Upstream-1321
Upstream-1323
Upstream-1325