Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1390 |
| | | Upstream | -1391 |
Matrix_120 | BEE2 | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1388 |
Matrix_153 | AP2 | Not available | Upstream | -1390 |
Matrix_156 | POC1 | Not available | Upstream | -1392 |
| | | Upstream | -1393 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -1391 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 84 |
| | | Intron | 66 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_27 | ATAIB;ATNIG1 | Not available | Upstream | -1393 |
Matrix_301 | PIL5 | Not available | Upstream | -1386 |
| | | Upstream | -1387 |
| | | Upstream | -1393 |
Matrix_320 | MYC4 | Not available | Upstream | -1392 |
Matrix_323 | BIM3 | Not available | Upstream | -1391 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -1391 |
Matrix_332 | SPT;ALC | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -1392 |
Matrix_369 | AT2G18300 | Not available | Upstream | -1389 |
| | | Upstream | -1390 |
| | | Upstream | -1392 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -395 |
Matrix_389 | ILR3 | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_403 | BZR1 | Not available | Upstream | -1390 |
Matrix_427 | ZAT14 | Not available | Upstream | -457 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -1389 |
Matrix_449 | BIM2 | Not available | Upstream | -1391 |
| | | Upstream | -1392 |
Matrix_465 | MYC4 | Not available | Upstream | -1391 |
Matrix_48 | PI | Not available | Upstream | -1326 |
Matrix_480 | BES1 | Not available | Upstream | -1390 |
| | | Upstream | -1391 |
Matrix_49 | FHY3/FAR1 | Not available | Intron | 69 |
Matrix_53 | MYC3 | Not available | Upstream | -1394 |
Matrix_64 | PIF5 | Not available | Upstream | -1392 |
Matrix_7 | PIF4 | Not available | Upstream | -1393 |
| | | Upstream | -1394 |
Matrix_77 | PRR5 | Not available | Upstream | -1391 |
Matrix_80 | BIM1 | Not available | Upstream | -1390 |
| | | Upstream | -1391 |
| | | Upstream | -1392 |
| | | Upstream | -1393 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -1392 |
| | | Upstream | -1394 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1393 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1393 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1393 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1393 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -1387 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -18 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -1394 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1255 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 583 |
| | | Intron | 581 |
| | | Upstream | -32 |
| | | Upstream | -53 |
| | | Upstream | -1321 |
| | | Upstream | -1323 |
| | | Upstream | -1325 |