View conserved binding sites


Gene
SL02G093060
Description
tRNA-dihydrouridine synthase 1-like protein (AHRD V1 **** D3BAF6_POLPA)%3B contains Interpro domain(s) IPR001269 tRNA-dihydrouridine synthase
Alias
Solyc02g093060.2.1;Solyc02g093060.2.1;Solyc02g093060.2;Solyc02g093060.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-99
Matrix_110ATABI4;AT3G57600Not availableUpstream-101
Matrix_119RRTF1Not availableUpstream-103
Matrix_138RRTF1Not availableUpstream-103
Upstream-100
Matrix_146ORA47Not availableUpstream-99
Matrix_147ERF3;AT1G80580Not availableUpstream-99
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-110
Matrix_190ATERF1Not availableUpstream-101
Matrix_224ERF1Not availableUpstream-103
Upstream-100
Matrix_234RAP2.3Not availableUpstream-102
Upstream-99
Matrix_243RAP2.12;RAP2.2Not availableUpstream-98
Matrix_252RAP2.6Not availableUpstream-102
Upstream-99
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-201
Matrix_261ATERF-1Not availableUpstream-99
Matrix_272DEAR4Not availableUpstream-99
Matrix_277RAP2.6Not availableUpstream-103
Matrix_287ERF2Not availableUpstream-99
Matrix_288RAP2.3Not availableUpstream-100
Matrix_295ERF1Not availableUpstream-99
Matrix_298RAV1Not availableUpstream-31
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-77
Matrix_321HRDNot availableUpstream-99
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-103
Upstream-100
Matrix_334AT3G23230Not availableUpstream-98
Matrix_343AT2G33710Not availableUpstream-102
Upstream-99
Matrix_344ATERF15;AT4G18450Not availableUpstream-99
Matrix_345POC1Not availableUpstream-79
Matrix_355ERF10;ERF11Not availableUpstream-103
Upstream-100
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-31
Matrix_360ORA59Not availableUpstream-99
Matrix_363RAP2.3Not availableUpstream-103
Upstream-100
Matrix_374AT5G07580;AT5G61590Not availableUpstream-100
Upstream-99
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-99
Matrix_378ATERF1Not availableUpstream-102
Upstream-99
Matrix_38SPL14Not availableUpstream-78
Matrix_405DREB2CNot availableUpstream-101
Matrix_406ATERF-7Not availableUpstream-104
Upstream-101
Matrix_409DEAR3Not availableUpstream-100
Matrix_413RAV1Not availableUpstream-31
Matrix_426CRF1;CRF2Not availableUpstream-101
Upstream-98
Matrix_448ATERF6Not availableUpstream-100
Matrix_45DRNNot availableUpstream-99
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-100
Matrix_462ATERF-8Not availableUpstream-104
Upstream-101
Matrix_47AtMYB77Not availableUpstream-82
Matrix_473RRTF1Not availableUpstream-102
Upstream-99
Matrix_484ATERF13Not availableUpstream-99
Matrix_488ABF1Not availableUpstream-83
Matrix_489RAV1Not availableUpstream-29
Matrix_490AtMYB77;ATMYB44Not availableUpstream-107
Matrix_493AT1G22985;AT1G71130Not availableUpstream-102
Upstream-99
Matrix_5AT5G51190;ERF104Not availableUpstream-99
Matrix_50ATERF14;AT5G43410Not availableUpstream-100
Matrix_506DRNL;ATERF-4Not availableUpstream-101
Upstream-98
Matrix_517ERF12Not availableUpstream-99
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-103
Upstream-100
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-101
Upstream-98
Matrix_91CRF3Not availableUpstream-102
Upstream-99
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-84
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-72
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-92
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-105
Upstream-72
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-98
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-72
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-90
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-78
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-89
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-33
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-33