View conserved binding sites


Gene
SL02G082190
Description
CTP synthase (AHRD V1 **** B6U7R1_MAIZE)%3B contains Interpro domain(s) IPR004468 CTP synthase
Alias
Solyc02g082190.2.1;Solyc02g082190.2.1;Solyc02g082190.2;Solyc02g082190.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-141
Matrix_146ORA47Not availableUpstream-1498
Matrix_224ERF1Not availableUpstream-272
Matrix_252RAP2.6Not availableUpstream-1502
Matrix_261ATERF-1Not availableUpstream-141
Matrix_272DEAR4Not availableUpstream-1498
Matrix_287ERF2Not availableUpstream-141
Matrix_288RAP2.3Not availableUpstream-1503
Matrix_295ERF1Not availableUpstream-271
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-142
Matrix_343AT2G33710Not availableUpstream-141
Matrix_355ERF10;ERF11Not availableUpstream-142
Matrix_360ORA59Not availableUpstream-271
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-141
Matrix_378ATERF1Not availableUpstream-1502
Matrix_409DEAR3Not availableUpstream-142
Matrix_426CRF1;CRF2Not availableUpstream-140
Matrix_484ATERF13Not availableUpstream-271
Matrix_493AT1G22985;AT1G71130Not availableUpstream-141
Matrix_506DRNL;ATERF-4Not availableUpstream-140
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-140
Matrix_91CRF3Not availableUpstream-141
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-270
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyDownstream5452
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-271
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-816
Motif_520AMYBOX1amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barleyDownstream5452
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream5452
Motif_614MYBGAHVCentral element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repressionDownstream5452
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream5880
Downstream5881
Downstream5882
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream5452
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron2356
Intron2358
Intron2360