Matrix_101 | ERF5 | Not available | Upstream | -141 |
Matrix_146 | ORA47 | Not available | Upstream | -1498 |
Matrix_224 | ERF1 | Not available | Upstream | -272 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1502 |
Matrix_261 | ATERF-1 | Not available | Upstream | -141 |
Matrix_272 | DEAR4 | Not available | Upstream | -1498 |
Matrix_287 | ERF2 | Not available | Upstream | -141 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1503 |
Matrix_295 | ERF1 | Not available | Upstream | -271 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -142 |
Matrix_343 | AT2G33710 | Not available | Upstream | -141 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -142 |
Matrix_360 | ORA59 | Not available | Upstream | -271 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -141 |
Matrix_378 | ATERF1 | Not available | Upstream | -1502 |
Matrix_409 | DEAR3 | Not available | Upstream | -142 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -140 |
Matrix_484 | ATERF13 | Not available | Upstream | -271 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -141 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -140 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -140 |
Matrix_91 | CRF3 | Not available | Upstream | -141 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -270 |
Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | Downstream | 5452 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -271 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -816 |
Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | Downstream | 5452 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 5452 |
Motif_614 | MYBGAHV | Central element of gibberellin (GA) response complex (GARC) in high-pI alpha-amylase gene in barley; Similar to c-myb and v-myb consensus binding site; GAmyb binds specifically to the TAACAAA box in vitro; GAmyb is the sole GA-regulated transcriptional factor required for transcriptional activation of the high-pI alpha-amylase; GARC consist of the pyrimidine, TAACAAA and TATCCAC boxes; GARE in RAmy1A gene; GARE and pyrimidine box in RAmy1A are partially involved in sugar repression | Downstream | 5452 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 5880 |
| | | Downstream | 5881 |
| | | Downstream | 5882 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 5452 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 2356 |
| | | Intron | 2358 |
| | | Intron | 2360 |