View conserved binding sites


Gene
SL01G110160
Description
Chromosome 11 contig 1 DNA sequence (AHRD V1 ***- Q00YQ5_OSTTA)
Alias
Solyc01g110160.2;Solyc01g110160.2.1;Solyc01g110160.2;Solyc01g110160.2.1
Binding siteNameDescriptionLocationPosition
Matrix_48PINot availableUpstream-62
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron2819
Motif_13E2F-varient binding site motifA genome-wide identification of E2F-regulated genes in ArabidopsisUpstream-59
Motif_372E2FATE2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expressionUpstream-59
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron2819
Intron2817
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-143
Upstream-216
Upstream-221
Upstream-259
Upstream-283
Upstream-327
Upstream-345
Upstream-368
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron2820
Intron2818
Intron2816
Intron2814
Intron2812
Intron2810