View conserved binding sites


Gene
SL01G097460
Description
Ribose-5-phosphate isomerase (AHRD V1 ***- A8IRQ1_CHLRE)%3B contains Interpro domain(s) IPR004788 Ribose 5-phosphate isomerase
Alias
Solyc01g097460.2.1;Solyc01g097460.2.1;Solyc01g097460.2;Solyc01g097460.2
Binding siteNameDescriptionLocationPosition
Matrix_164AT1G02030;AT2G45120;AZF2;AT3G60580Not availableUpstream-88
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-91
Matrix_198STZ;C2H2;AZF3Not availableUpstream-88
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-104
Matrix_379RHL41Not availableUpstream-88
Matrix_436AT3G49930;AZF1Not availableUpstream-88
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-91
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-125
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-103
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-103
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-102
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-108
Motif_419MYB4 binding site motifNot availableUpstream-103
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-103
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-104
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-121
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-104