Matrix_119 | RRTF1 | Not available | Upstream | -94 |
Matrix_138 | RRTF1 | Not available | Upstream | -94 |
Matrix_234 | RAP2.3 | Not available | Upstream | -95 |
Matrix_271 | AT3G16350 | Not available | Upstream | -1105 |
Matrix_277 | RAP2.6 | Not available | Upstream | -94 |
Matrix_287 | ERF2 | Not available | Upstream | -95 |
Matrix_288 | RAP2.3 | Not available | Upstream | -94 |
Matrix_295 | ERF1 | Not available | Upstream | -93 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -94 |
Matrix_334 | AT3G23230 | Not available | Upstream | -94 |
Matrix_336 | AT5G08520 | Not available | Upstream | -1105 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -94 |
Matrix_360 | ORA59 | Not available | Upstream | -93 |
Matrix_363 | RAP2.3 | Not available | Upstream | -94 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -94 |
Matrix_406 | ATERF-7 | Not available | Upstream | -93 |
Matrix_414 | AGL15 | Not available | Upstream | -905 |
| | | Upstream | -885 |
Matrix_48 | PI | Not available | Upstream | -897 |
| | | Upstream | -886 |
| | | Upstream | -879 |
Matrix_484 | ATERF13 | Not available | Upstream | -93 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -94 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -94 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -907 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -153 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -551 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -92 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -93 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -155 |
Motif_402 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | Upstream | -94 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Upstream | -154 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -94 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -1099 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Upstream | -195 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -900 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -907 |