View conserved binding sites


Gene
PT17G10010
Description
protein ligase At3g02290
Alias
Potri.017G100100;PAC:26985649;Potri.017G100100.1;Potri.017G100100.1
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-990
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-990
Upstream-993
Matrix_22BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-25
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-994
Matrix_39AP1Not availableUpstream-1163
Matrix_401MYB55Not availableUpstream-993
Upstream-994
Matrix_412GL1Not availableDownstream3450
Matrix_452MYB46Not availableUpstream-993
Upstream-994
Matrix_455MYB111Not availableUpstream-993
Matrix_496ATMYB15Not availableUpstream-990
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-990
Upstream-993
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-8
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1939
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-1009
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1938
Motif_381GATA-2;GATA-4;GATA-3;GATA-1Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-1008
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream3450
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Downstream3409
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3450
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1934
Upstream-1937
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3450