View conserved binding sites


Gene
PT12G10660
Description
protoporphyrin IX methyltransferase, chloroplastic
Alias
Potri.012G106600;Potri.012G106600.2;Potri.012G106600.2;PAC:27050893
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-45
Upstream-43
Matrix_151ASIL1Not availableUpstream-44
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-43
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-44
Upstream-42
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-89
Matrix_243RAP2.12;RAP2.2Not availableUpstream-42
Matrix_261ATERF-1Not availableUpstream-44
Matrix_287ERF2Not availableUpstream-43
Matrix_301PIL5Not availableUpstream-63
Matrix_334AT3G23230Not availableUpstream-42
Matrix_344ATERF15;AT4G18450Not availableUpstream-43
Matrix_374AT5G07580;AT5G61590Not availableUpstream-43
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-43
Matrix_406ATERF-7Not availableUpstream-43
Matrix_433ATERF1Not availableUpstream-44
Matrix_448ATERF6Not availableUpstream-44
Matrix_462ATERF-8Not availableUpstream-43
Matrix_48PINot availableUpstream-54
Matrix_482AT2G25650;AT4G00270Not availableUpstream-41
Matrix_484ATERF13Not availableUpstream-43
Matrix_493AT1G22985;AT1G71130Not availableUpstream-43
Matrix_496ATMYB15Not availableUpstream-89
Matrix_5AT5G51190;ERF104Not availableUpstream-43
Matrix_59AT4G00238;AT4G00250Not availableUpstream-44
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-85
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-70
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1911
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream1813
Motif_244ABRE-like binding site motifNot availableUpstream-64
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemDownstream1911
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-62
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionDownstream1785
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-72
Motif_530CPBCSPORThe sequence critical for Cytokinin-enhanced Protein Binding in vitro, found in -490 to -340 of the promoter of the cucumber POR (NADPH-protochlorophyllide reductase) geneDownstream1919
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-78
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-73
Downstream1826
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream1911
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1863
Motif_683AtMYB2 BS in RD22Binding site for MYB (ATMYB2) in dehydration-responsive gene, rd22; MYB binding site in rd22 gene of Arabidopsis thaliana; ABA-induction; Located at ca. -141 of rd22 gene; Also MYC at ca. -200 of rd22 gene; Role of Arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expressionDownstream1826
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneUpstream-74