View conserved binding sites


Gene
PT10G17650
Description
CTP synthase
Alias
Potri.010G176500.1;PAC:26980131;Potri.010G176500.1;Potri.010G176500
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-596
Matrix_110ATABI4;AT3G57600Not availableUpstream-594
Matrix_119RRTF1Not availableUpstream-595
Matrix_138RRTF1Not availableUpstream-595
Matrix_146ORA47Not availableUpstream-596
Matrix_147ERF3;AT1G80580Not availableUpstream-594
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-595
Matrix_190ATERF1Not availableUpstream-597
Matrix_224ERF1Not availableUpstream-595
Matrix_234RAP2.3Not availableUpstream-596
Matrix_243RAP2.12;RAP2.2Not availableUpstream-595
Matrix_252RAP2.6Not availableUpstream-596
Matrix_261ATERF-1Not availableUpstream-595
Matrix_272DEAR4Not availableUpstream-596
Matrix_287ERF2Not availableUpstream-596
Matrix_288RAP2.3Not availableUpstream-595
Matrix_295ERF1Not availableUpstream-594
Matrix_321HRDNot availableUpstream-595
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-595
Matrix_334AT3G23230Not availableUpstream-595
Matrix_343AT2G33710Not availableUpstream-596
Matrix_355ERF10;ERF11Not availableUpstream-595
Matrix_360ORA59Not availableUpstream-594
Matrix_363RAP2.3Not availableUpstream-595
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-595
Matrix_378ATERF1Not availableUpstream-596
Matrix_406ATERF-7Not availableUpstream-594
Matrix_409DEAR3Not availableUpstream-595
Matrix_426CRF1;CRF2Not availableUpstream-595
Matrix_45DRNNot availableUpstream-594
Matrix_462ATERF-8Not availableUpstream-594
Matrix_473RRTF1Not availableUpstream-596
Matrix_484ATERF13Not availableUpstream-594
Matrix_493AT1G22985;AT1G71130Not availableUpstream-595
Matrix_50ATERF14;AT5G43410Not availableUpstream-595
Matrix_506DRNL;ATERF-4Not availableUpstream-595
Matrix_517ERF12Not availableUpstream-594
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-595
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-595
Matrix_91CRF3Not availableUpstream-595
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-1043
Upstream-1041
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-1513
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream5280
Motif_207MAMMALENHANCore sequence in enhancers from polyoma virus and from the IgM heavy chain geneUpstream-291
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream5280
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-280
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-325
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-301
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-593
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyUpstream-298
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream5280
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-1043
Upstream-1041
Upstream-1039
Motif_476XYLATcis-element identified among the promoters of the core xylem gene setDownstream5268
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-1527
Motif_562-300CORETGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factorsUpstream-316
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-290
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1512
Upstream-340
Downstream5265
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-340
Downstream5265
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-1043
Upstream-1041
Upstream-1039
Upstream-1037
Upstream-1035
Upstream-1033
Upstream-1031