Matrix_101 | ERF5 | Not available | Upstream | -596 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -594 |
Matrix_119 | RRTF1 | Not available | Upstream | -595 |
Matrix_138 | RRTF1 | Not available | Upstream | -595 |
Matrix_146 | ORA47 | Not available | Upstream | -596 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -594 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -595 |
Matrix_190 | ATERF1 | Not available | Upstream | -597 |
Matrix_224 | ERF1 | Not available | Upstream | -595 |
Matrix_234 | RAP2.3 | Not available | Upstream | -596 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -595 |
Matrix_252 | RAP2.6 | Not available | Upstream | -596 |
Matrix_261 | ATERF-1 | Not available | Upstream | -595 |
Matrix_272 | DEAR4 | Not available | Upstream | -596 |
Matrix_287 | ERF2 | Not available | Upstream | -596 |
Matrix_288 | RAP2.3 | Not available | Upstream | -595 |
Matrix_295 | ERF1 | Not available | Upstream | -594 |
Matrix_321 | HRD | Not available | Upstream | -595 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -595 |
Matrix_334 | AT3G23230 | Not available | Upstream | -595 |
Matrix_343 | AT2G33710 | Not available | Upstream | -596 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -595 |
Matrix_360 | ORA59 | Not available | Upstream | -594 |
Matrix_363 | RAP2.3 | Not available | Upstream | -595 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -595 |
Matrix_378 | ATERF1 | Not available | Upstream | -596 |
Matrix_406 | ATERF-7 | Not available | Upstream | -594 |
Matrix_409 | DEAR3 | Not available | Upstream | -595 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -595 |
Matrix_45 | DRN | Not available | Upstream | -594 |
Matrix_462 | ATERF-8 | Not available | Upstream | -594 |
Matrix_473 | RRTF1 | Not available | Upstream | -596 |
Matrix_484 | ATERF13 | Not available | Upstream | -594 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -595 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -595 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -595 |
Matrix_517 | ERF12 | Not available | Upstream | -594 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -595 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -595 |
Matrix_91 | CRF3 | Not available | Upstream | -595 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -1043 |
| | | Upstream | -1041 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -1513 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Downstream | 5280 |
Motif_207 | MAMMALENHAN | Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene | Upstream | -291 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 5280 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -280 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -325 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -301 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -593 |
Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | Upstream | -298 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Downstream | 5280 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -1043 |
| | | Upstream | -1041 |
| | | Upstream | -1039 |
Motif_476 | XYLAT | cis-element identified among the promoters of the core xylem gene set | Downstream | 5268 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -1527 |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Upstream | -316 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -290 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1512 |
| | | Upstream | -340 |
| | | Downstream | 5265 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -340 |
| | | Downstream | 5265 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -1043 |
| | | Upstream | -1041 |
| | | Upstream | -1039 |
| | | Upstream | -1037 |
| | | Upstream | -1035 |
| | | Upstream | -1033 |
| | | Upstream | -1031 |