Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -263 |
| | | Upstream | -264 |
Matrix_109 | GBF3 | Not available | Upstream | -265 |
| | | Upstream | -266 |
| | | Upstream | -304 |
| | | Upstream | -305 |
Matrix_113 | ABI5 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -263 |
| | | Upstream | -264 |
Matrix_129 | ABF1 | Not available | Upstream | -264 |
| | | Upstream | -265 |
Matrix_134 | ABF1 | Not available | Upstream | -265 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -260 |
| | | Upstream | -261 |
| | | Upstream | -299 |
| | | Upstream | -300 |
Matrix_150 | UNE10;PIF7 | Not available | Upstream | -265 |
Matrix_153 | AP2 | Not available | Upstream | -263 |
| | | Upstream | -264 |
Matrix_156 | POC1 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_166 | TGA4 | Not available | Upstream | -229 |
| | | Upstream | -230 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -264 |
| | | Upstream | -265 |
Matrix_216 | TCP16 | Not available | Upstream | -372 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -265 |
| | | Upstream | -266 |
Matrix_24 | POC1 | Not available | Upstream | -260 |
| | | Upstream | -261 |
| | | Upstream | -299 |
| | | Upstream | -300 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -372 |
Matrix_275 | ZAP1 | Characterization of a zinc-dependent transcriptional activator from Arabidopsis | Upstream | -288 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -227 |
| | | Upstream | -228 |
| | | Upstream | -302 |
| | | Upstream | -303 |
Matrix_296 | GBF2 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_301 | PIL5 | Not available | Upstream | -259 |
| | | Upstream | -260 |
| | | Upstream | -298 |
| | | Upstream | -299 |
Matrix_331 | GBF1 | Not available | Upstream | -265 |
| | | Upstream | -266 |
| | | Upstream | -304 |
| | | Upstream | -305 |
Matrix_332 | SPT;ALC | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_345 | POC1 | Not available | Upstream | -299 |
| | | Upstream | -300 |
Matrix_359 | FLC | Not available | Upstream | -262 |
Matrix_403 | BZR1 | Not available | Upstream | -262 |
| | | Upstream | -263 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -228 |
| | | Upstream | -229 |
| | | Upstream | -262 |
| | | Upstream | -263 |
Matrix_456 | bZIP60 | Not available | Upstream | -228 |
| | | Upstream | -229 |
| | | Upstream | -303 |
| | | Upstream | -304 |
Matrix_470 | WRKY18 | Not available | Upstream | -289 |
Matrix_488 | ABF1 | Not available | Upstream | -263 |
| | | Upstream | -264 |
| | | Upstream | -302 |
| | | Upstream | -303 |
Matrix_504 | WRKY40 | Not available | Upstream | -290 |
Matrix_55 | PIF3 | Not available | Upstream | -263 |
| | | Upstream | -264 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -229 |
| | | Upstream | -230 |
Matrix_64 | PIF5 | Not available | Upstream | -265 |
| | | Upstream | -266 |
Matrix_7 | PIF4 | Not available | Upstream | -266 |
| | | Upstream | -267 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -265 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -266 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -266 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -266 |
| | | Upstream | -430 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -228 |
| | | Upstream | -266 |
| | | Upstream | -305 |
Motif_256 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | Upstream | -261 |
| | | Upstream | -1963 |
Motif_270 | ELRECOREPCRP1 | ElRE (Elicitor Responsive Element) core of parsley PR1 genes; consensus sequence of elements W1 and W2 of parsley PR1-1 and PR1-2 promoters; Box W1 and W2 are the binding site of WRKY1 and WRKY2, respectively; ERE; WA box; One of the W boxes found in the Parsley WRKY1 gene promoter; Required for elicitor responsiveness; WC box WB box and WC box constitute a palindrome; WRKY1 protein binding site; W-box found in thioredoxin h5 gene in Arabidopsis | Upstream | -291 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -266 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 887 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -230 |
| | | Upstream | -266 |
| | | Upstream | -305 |
Motif_347 | OPAQUE2ZMB32 | opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC) | Upstream | -229 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -229 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -229 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -266 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -231 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -269 |
| | | Upstream | -404 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -286 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -267 |
| | | Upstream | -306 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -306 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -231 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -267 |
| | | Upstream | -306 |
| | | Upstream | -429 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -266 |
| | | Upstream | -305 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -213 |
Motif_95 | UPRE2AT | XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | Upstream | -229 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -300 |