Matrix_113 | ABI5 | Not available | Upstream | -269 |
| | | Upstream | -358 |
Matrix_120 | BEE2 | Not available | Upstream | -270 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -270 |
| | | Upstream | -271 |
Matrix_153 | AP2 | Not available | Upstream | -269 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -270 |
Matrix_186 | FHY3 | Not available | Upstream | -268 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -270 |
Matrix_301 | PIL5 | Not available | Upstream | -265 |
| | | Upstream | -271 |
| | | Upstream | -358 |
Matrix_320 | MYC4 | Not available | Upstream | -271 |
Matrix_323 | BIM3 | Not available | Upstream | -270 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -270 |
Matrix_332 | SPT;ALC | Not available | Upstream | -271 |
Matrix_365 | AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1 | Not available | Upstream | -271 |
Matrix_369 | AT2G18300 | Not available | Upstream | -268 |
| | | Upstream | -270 |
Matrix_389 | ILR3 | Not available | Upstream | -270 |
Matrix_396 | AP3 | Not available | Intron | 287 |
| | | Upstream | -127 |
Matrix_449 | BIM2 | Not available | Upstream | -270 |
Matrix_465 | MYC4 | Not available | Upstream | -270 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -271 |
Matrix_480 | BES1 | Not available | Upstream | -269 |
| | | Upstream | -270 |
Matrix_53 | MYC3 | Not available | Upstream | -271 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -271 |
Matrix_7 | PIF4 | Not available | Upstream | -271 |
Matrix_77 | PRR5 | Not available | Upstream | -268 |
| | | Upstream | -356 |
Matrix_80 | BIM1 | Not available | Upstream | -269 |
| | | Upstream | -271 |
| | | Upstream | -358 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -271 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -271 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -270 |
| | | Upstream | -271 |
| | | Upstream | -357 |
| | | Upstream | -358 |
Motif_303 | VOZATVPP | VOZ-binding sequence found in the promoter of A. thaliana V-PPase (vacuolar H+-pyrophosphatase) gene; Involved in its expression during pollen development; one-zinc finger | Upstream | -249 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -271 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -128 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -92 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -278 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -271 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -272 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -275 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Downstream | 1694 |