View conserved binding sites


Gene
PT08G09200
Description
Eukaryotic translation initiation factor 5A
Alias
Potri.008G092000.1;Potri.008G092000;Potri.008G092000.1;PAC:27039265
Binding siteNameDescriptionLocationPosition
Matrix_113ABI5Not availableUpstream-269
Upstream-358
Matrix_120BEE2Not availableUpstream-270
Matrix_14ZCW32;AT5G62610Not availableUpstream-270
Upstream-271
Matrix_153AP2Not availableUpstream-269
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-270
Matrix_186FHY3Not availableUpstream-268
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-270
Matrix_301PIL5Not availableUpstream-265
Upstream-271
Upstream-358
Matrix_320MYC4Not availableUpstream-271
Matrix_323BIM3Not availableUpstream-270
Matrix_330MYC2;TT8Not availableUpstream-270
Matrix_332SPT;ALCNot availableUpstream-271
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-271
Matrix_369AT2G18300Not availableUpstream-268
Upstream-270
Matrix_389ILR3Not availableUpstream-270
Matrix_396AP3Not availableIntron287
Upstream-127
Matrix_449BIM2Not availableUpstream-270
Matrix_465MYC4Not availableUpstream-270
Matrix_476bHLH115;bHLH34Not availableUpstream-271
Matrix_480BES1Not availableUpstream-269
Upstream-270
Matrix_53MYC3Not availableUpstream-271
Matrix_60AT1G01260;AT5G57150Not availableUpstream-271
Matrix_7PIF4Not availableUpstream-271
Matrix_77PRR5Not availableUpstream-268
Upstream-356
Matrix_80BIM1Not availableUpstream-269
Upstream-271
Upstream-358
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-271
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-271
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-270
Upstream-271
Upstream-357
Upstream-358
Motif_303VOZATVPPVOZ-binding sequence found in the promoter of A. thaliana V-PPase (vacuolar H+-pyrophosphatase) gene; Involved in its expression during pollen development; one-zinc fingerUpstream-249
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-271
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-128
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-92
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-278
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-271
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-272
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-275
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Downstream1694