Matrix_101 | ERF5 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -575 |
| | | Upstream | -576 |
Matrix_119 | RRTF1 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_138 | RRTF1 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_146 | ORA47 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Intron | 3157 |
| | | Intron | 3156 |
| | | Intron | 3155 |
Matrix_190 | ATERF1 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_224 | ERF1 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_234 | RAP2.3 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_252 | RAP2.6 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_261 | ATERF-1 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_272 | DEAR4 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_287 | ERF2 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_288 | RAP2.3 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_295 | ERF1 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_321 | HRD | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_334 | AT3G23230 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_343 | AT2G33710 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_360 | ORA59 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_363 | RAP2.3 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_378 | ATERF1 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_406 | ATERF-7 | Not available | Upstream | -575 |
| | | Upstream | -576 |
Matrix_409 | DEAR3 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_45 | DRN | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -576 |
Matrix_462 | ATERF-8 | Not available | Upstream | -575 |
| | | Upstream | -576 |
Matrix_473 | RRTF1 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_484 | ATERF13 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_517 | ERF12 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -576 |
| | | Upstream | -577 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -578 |
| | | Upstream | -579 |
Matrix_91 | CRF3 | Not available | Upstream | -577 |
| | | Upstream | -578 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -564 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -1162 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 5305 |
| | | Upstream | -1171 |
Motif_207 | MAMMALENHAN | Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene | Upstream | -280 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 5308 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -271 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -1692 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -155 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -578 |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | Upstream | -1688 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -389 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -161 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -567 |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Upstream | -306 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -1692 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -567 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -831 |
| | | Upstream | -1678 |
| | | Upstream | -1679 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -160 |
| | | Upstream | -281 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1171 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -156 |
| | | Upstream | -1161 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -567 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -1175 |