View conserved binding sites


Gene
PT08G08020
Description
CTP synthase
Alias
Potri.008G080100;Potri.008G080100.1;Potri.008G080100.1;PAC:27039762
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-577
Upstream-578
Matrix_110ATABI4;AT3G57600Not availableUpstream-575
Upstream-576
Matrix_119RRTF1Not availableUpstream-576
Upstream-577
Matrix_138RRTF1Not availableUpstream-576
Upstream-577
Matrix_146ORA47Not availableUpstream-577
Upstream-578
Matrix_147ERF3;AT1G80580Not availableUpstream-577
Upstream-578
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-578
Upstream-579
Matrix_171LBD3;LBD4Not availableUpstream-576
Upstream-577
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableIntron3157
Intron3156
Intron3155
Matrix_190ATERF1Not availableUpstream-578
Upstream-579
Matrix_224ERF1Not availableUpstream-576
Upstream-577
Matrix_234RAP2.3Not availableUpstream-577
Upstream-578
Matrix_243RAP2.12;RAP2.2Not availableUpstream-578
Upstream-579
Matrix_252RAP2.6Not availableUpstream-577
Upstream-578
Matrix_261ATERF-1Not availableUpstream-577
Upstream-578
Matrix_272DEAR4Not availableUpstream-577
Upstream-578
Matrix_287ERF2Not availableUpstream-577
Upstream-578
Matrix_288RAP2.3Not availableUpstream-576
Upstream-577
Matrix_295ERF1Not availableUpstream-577
Upstream-578
Matrix_321HRDNot availableUpstream-577
Upstream-578
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-576
Upstream-577
Matrix_334AT3G23230Not availableUpstream-578
Upstream-579
Matrix_343AT2G33710Not availableUpstream-577
Upstream-578
Matrix_355ERF10;ERF11Not availableUpstream-576
Upstream-577
Matrix_360ORA59Not availableUpstream-577
Upstream-578
Matrix_363RAP2.3Not availableUpstream-576
Upstream-577
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-577
Upstream-578
Matrix_378ATERF1Not availableUpstream-577
Upstream-578
Matrix_406ATERF-7Not availableUpstream-575
Upstream-576
Matrix_409DEAR3Not availableUpstream-576
Upstream-577
Matrix_426CRF1;CRF2Not availableUpstream-578
Upstream-579
Matrix_45DRNNot availableUpstream-577
Upstream-578
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-576
Matrix_462ATERF-8Not availableUpstream-575
Upstream-576
Matrix_473RRTF1Not availableUpstream-577
Upstream-578
Matrix_484ATERF13Not availableUpstream-577
Upstream-578
Matrix_493AT1G22985;AT1G71130Not availableUpstream-577
Upstream-578
Matrix_50ATERF14;AT5G43410Not availableUpstream-576
Upstream-577
Matrix_506DRNL;ATERF-4Not availableUpstream-578
Upstream-579
Matrix_517ERF12Not availableUpstream-577
Upstream-578
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-576
Upstream-577
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-578
Upstream-579
Matrix_91CRF3Not availableUpstream-577
Upstream-578
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-564
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-1162
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream5305
Upstream-1171
Motif_207MAMMALENHANCore sequence in enhancers from polyoma virus and from the IgM heavy chain geneUpstream-280
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream5308
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-271
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1692
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-155
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-578
Motif_34LECPLEACS2Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 geneUpstream-1688
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-389
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-161
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-567
Motif_562-300CORETGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factorsUpstream-306
Motif_570POLASIG2PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genesUpstream-1692
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-567
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-831
Upstream-1678
Upstream-1679
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-160
Upstream-281
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1171
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-156
Upstream-1161
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-567
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-1175