View conserved binding sites


Gene
PT07G10590
Description
center subunit N, chloroplastic
Alias
Potri.007G105900;Potri.007G105900.1;PAC:27015022;Potri.007G105900.1
Binding siteNameDescriptionLocationPosition
Matrix_106AT5G47390Not availableUpstream-165
Upstream-166
Matrix_130TCP16Not availableUpstream-254
Upstream-255
Matrix_144AT5G08330;AT5G23280Not availableUpstream-254
Upstream-255
Matrix_196TCP20;AT5G41030Not availableUpstream-256
Upstream-257
Matrix_216TCP16Not availableUpstream-254
Upstream-255
Matrix_232TCP23Not availableUpstream-255
Upstream-256
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-254
Upstream-255
Matrix_271AT3G16350Not availableUpstream-165
Upstream-166
Matrix_281TCP13Not availableUpstream-256
Upstream-257
Matrix_294MEE35Not availableUpstream-256
Upstream-257
Matrix_297TCP15Not availableUpstream-255
Upstream-256
Matrix_348AT5G51910Not availableUpstream-254
Upstream-255
Matrix_40TCP2Not availableUpstream-254
Upstream-255
Matrix_42AT2G45680Not availableUpstream-254
Upstream-255
Matrix_507TCP3Not availableUpstream-255
Upstream-256
Matrix_6AT1G70000Not availableUpstream-165
Upstream-166
Matrix_82TCP17Not availableUpstream-256
Upstream-257
Matrix_87AT1G19000Not availableUpstream-164
Upstream-165
Matrix_9AT5G04760Not availableUpstream-166
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-184
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-247
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-96
Upstream-164
Upstream-329
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-107
Upstream-168
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-167
Upstream-362
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-107
Upstream-168
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-149
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-156
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-97
Upstream-165
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-106
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-133
Motif_375ERELEE4ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter regionUpstream-264
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-262
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-97
Upstream-165
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-242
Upstream-255
Upstream-257
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-98
Upstream-166
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream736
Downstream735
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-184
Motif_94UP1ATMSDUp1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-252