View conserved binding sites


Gene
PT06G15720
Description
Palmitoyl-acyl carrier protein thioesterase, chloroplastic
Alias
Potri.006G157200.1;Potri.006G157200;Potri.006G157200.1;PAC:27008730
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableDownstream2388
Matrix_109GBF3Not availableUpstream-1072
Matrix_113ABI5Not availableDownstream2388
Downstream2390
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1074
Downstream2385
Matrix_122ABF1;AREB2Not availableDownstream2389
Matrix_129ABF1Not availableDownstream2389
Matrix_134ABF1Not availableDownstream2389
Matrix_145GBF4;AT5G44080Not availableDownstream2390
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1075
Downstream2385
Matrix_156POC1Not availableDownstream2388
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-1083
Upstream-1075
Matrix_192FHY3/FAR1Not availableDownstream2386
Downstream2390
Matrix_194HYH;HY5Not availableDownstream2386
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableDownstream2389
Matrix_214AP1Not availableDownstream2387
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream2386
Matrix_24POC1Not availableUpstream-1075
Downstream2385
Matrix_247PIF3Not availableDownstream2389
Matrix_264ATAREB1Not availableDownstream2386
Downstream2389
Matrix_296GBF2Not availableUpstream-1071
Matrix_300bZIP68;bZIP16Not availableUpstream-1071
Downstream2389
Matrix_301PIL5Not availableUpstream-1076
Downstream2390
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1073
Matrix_307RGL2;RGL3Not availableUpstream-735
Matrix_31SPL1Not availableUpstream-738
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-1072
Matrix_329WRKY12Not availableUpstream-1944
Matrix_331GBF1Not availableUpstream-1072
Downstream2388
Matrix_332SPT;ALCNot availableDownstream2389
Matrix_338AP2Not availableDownstream2386
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-1073
Matrix_345POC1Not availableUpstream-1075
Upstream-1074
Downstream2385
Matrix_356PRR5Not availableDownstream2382
Downstream2386
Matrix_370WRKY50;WRKY51Not availableUpstream-1945
Matrix_389ILR3Not availableDownstream2389
Matrix_39AP1Not availableUpstream-818
Matrix_403BZR1Not availableDownstream2387
Matrix_443AGL15Not availableDownstream2387
Matrix_466PRR5Not availableDownstream2386
Matrix_467RAV1Not availableUpstream-1073
Matrix_477RAV1Not availableUpstream-1073
Matrix_48PINot availableUpstream-1006
Matrix_488ABF1Not availableUpstream-1079
Downstream2381
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-1075
Matrix_55PIF3Not availableDownstream2388
Matrix_7PIF4Not availableDownstream2389
Matrix_77PRR5Not availableDownstream2388
Motif_122TGTCACACMCUCUMISINTGTCACA motif found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; A novel enhancer element necessary for fruit-specific expression of the cucumisin geneDownstream2395
Motif_163BOXCPSAS1Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1Upstream-1034
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesDownstream2391
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-1042
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1069
Downstream2391
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream2465
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFDownstream2389
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREDownstream2390
Downstream2391
Motif_244ABRE-like binding site motifNot availableDownstream2389
Downstream2391
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemDownstream2391
Downstream2405
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-1029
Upstream-654
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementDownstream2389
Motif_314HY5ATG box; Binding site of Arabidopsis bZIP protein HY5; HY5 is constitutively nuclear localized and is involved in light regulation of transcriptional activity of the promoters containing the G-box;HY5 abundance peaks in early seedling development, consistent with its role in promoting photomorphogenesis; HY5 stability and activity is regulated by phosphorylation in its COP1 binding domain; HY5 regulates stimulus-induced development of root and hypocotylDownstream2388
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream2391
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream2463
Motif_384SITEIOSPCNASite I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activationUpstream-1070
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-652
Motif_419MYB4 binding site motifNot availableUpstream-654
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyDownstream2390
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-1069
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Downstream2464
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-1030
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisDownstream2389
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationDownstream2389
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisDownstream2389
Downstream2392
Motif_638ABRE binding site motifNot availableDownstream2389
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Downstream2388
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-656
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-699
Downstream2401
Downstream2494
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-654
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-656
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREDownstream2392
Motif_86ACGTABOXA-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repressionUpstream-737
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Downstream2388