Matrix_109 | GBF3 | Not available | Upstream | -312 |
| | | Upstream | -635 |
| | | Upstream | -637 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -445 |
| | | Upstream | -632 |
| | | Upstream | -633 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -312 |
| | | Upstream | -633 |
| | | Upstream | -637 |
Matrix_284 | KAN2;KAN3;KAN;KAN4 | Not available | Upstream | -140 |
| | | Upstream | -141 |
Matrix_331 | GBF1 | Not available | Upstream | -312 |
| | | Upstream | -635 |
| | | Upstream | -637 |
Matrix_345 | POC1 | Not available | Upstream | -445 |
| | | Upstream | -632 |
| | | Upstream | -633 |
Matrix_348 | AT5G51910 | Not available | Upstream | -357 |
Matrix_42 | AT2G45680 | Not available | Upstream | -357 |
Matrix_429 | KAN4 | Not available | Upstream | -140 |
| | | Upstream | -141 |
Matrix_471 | KAN4 | Not available | Upstream | -139 |
| | | Upstream | -140 |
| | | Upstream | -141 |
| | | Upstream | -142 |
Matrix_80 | BIM1 | Not available | Upstream | -635 |
| | | Upstream | -637 |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | Upstream | -141 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Intron | 916 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Intron | 915 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -357 |
| | | Upstream | -359 |
Motif_94 | UP1ATMSD | Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -354 |