Matrix_101 | ERF5 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_104 | PI | Not available | Upstream | -1345 |
| | | Upstream | -1346 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1345 |
Matrix_109 | GBF3 | Not available | Upstream | -1347 |
Matrix_113 | ABI5 | Not available | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1342 |
| | | Upstream | -1343 |
| | | Upstream | -1344 |
Matrix_119 | RRTF1 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_120 | BEE2 | Not available | Downstream | 2353 |
| | | Upstream | -1346 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -1346 |
| | | Upstream | -1347 |
Matrix_124 | AtHB23;ATHB13;ATHB20;ATHB5 | Not available | Upstream | -452 |
| | | Upstream | -453 |
Matrix_129 | ABF1 | Not available | Upstream | -1346 |
| | | Upstream | -1347 |
Matrix_134 | ABF1 | Not available | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_138 | RRTF1 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Downstream | 2353 |
| | | Upstream | -1347 |
Matrix_140 | ATHB5 | DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | Upstream | -452 |
| | | Upstream | -453 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_146 | ORA47 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1342 |
Matrix_156 | POC1 | Not available | Upstream | -1345 |
| | | Upstream | -1347 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Downstream | 2353 |
| | | Upstream | -1346 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Downstream | 2356 |
| | | Upstream | -1343 |
| | | Upstream | -1344 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -1343 |
| | | Upstream | -1344 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -1346 |
Matrix_214 | AP1 | Not available | Upstream | -1344 |
| | | Upstream | -1345 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_224 | ERF1 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_233 | MYC3 | Not available | Upstream | -1347 |
Matrix_234 | RAP2.3 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_24 | POC1 | Not available | Upstream | -1342 |
Matrix_247 | PIF3 | Not available | Upstream | -1346 |
Matrix_25 | AP3 | Not available | Intron | 898 |
| | | Intron | 891 |
Matrix_252 | RAP2.6 | Not available | Upstream | -480 |
Matrix_255 | cdf3 | Not available | Downstream | 1843 |
Matrix_261 | ATERF-1 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_264 | ATAREB1 | Not available | Downstream | 2353 |
| | | Upstream | -1346 |
| | | Upstream | -1347 |
Matrix_277 | RAP2.6 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_285 | DDF1 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_287 | ERF2 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_288 | RAP2.3 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_295 | ERF1 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_296 | GBF2 | Not available | Upstream | -1346 |
| | | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1346 |
| | | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_301 | PIL5 | Not available | Upstream | -1341 |
| | | Upstream | -1342 |
| | | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1344 |
Matrix_320 | MYC4 | Not available | Downstream | 2352 |
Matrix_323 | BIM3 | Not available | Downstream | 2353 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_330 | MYC2;TT8 | Not available | Downstream | 2353 |
Matrix_331 | GBF1 | Not available | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_332 | SPT;ALC | Not available | Upstream | -1346 |
| | | Upstream | -1347 |
| | | Upstream | -1348 |
Matrix_334 | AT3G23230 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_338 | AP2 | Not available | Upstream | -1343 |
| | | Upstream | -1344 |
Matrix_343 | AT2G33710 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_345 | POC1 | Not available | Upstream | -1342 |
| | | Upstream | -1343 |
Matrix_352 | LEC2 | Not available | Downstream | 2226 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_356 | PRR5 | Not available | Upstream | -1339 |
| | | Upstream | -1340 |
Matrix_359 | FLC | Not available | Upstream | -1344 |
Matrix_360 | ORA59 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_363 | RAP2.3 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_369 | AT2G18300 | Not available | Downstream | 2353 |
| | | Upstream | -1346 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Downstream | 2100 |
| | | Intron | 900 |
| | | Intron | 899 |
Matrix_378 | ATERF1 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_389 | ILR3 | Not available | Downstream | 2353 |
| | | Upstream | -1346 |
| | | Upstream | -1347 |
Matrix_403 | BZR1 | Not available | Upstream | -1344 |
| | | Upstream | -1345 |
Matrix_406 | ATERF-7 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_414 | AGL15 | Not available | Intron | 906 |
| | | Intron | 905 |
| | | Intron | 899 |
| | | Intron | 898 |
| | | Intron | 887 |
Matrix_420 | ANAC58 | Not available | Intron | 834 |
| | | Intron | 833 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_435 | ATHB51 | Not available | Upstream | -452 |
Matrix_437 | MYC2 | Not available | Downstream | 2352 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -1346 |
Matrix_443 | AGL15 | Not available | Upstream | -1344 |
| | | Upstream | -1345 |
Matrix_449 | BIM2 | Not available | Downstream | 2353 |
Matrix_45 | DRN | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_46 | AT4G21895 | Not available | Downstream | 2193 |
Matrix_462 | ATERF-8 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_465 | MYC4 | Not available | Downstream | 2353 |
Matrix_468 | ATHB9 | The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins | Upstream | -448 |
Matrix_473 | RRTF1 | Not available | Upstream | -480 |
| | | Upstream | -481 |
Matrix_476 | bHLH115;bHLH34 | Not available | Downstream | 2352 |
Matrix_48 | PI | Not available | Downstream | 2073 |
Matrix_480 | BES1 | Not available | Upstream | -1346 |
| | | Upstream | -1347 |
Matrix_484 | ATERF13 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_488 | ABF1 | Not available | Upstream | -1338 |
| | | Upstream | -1339 |
| | | Upstream | -1345 |
| | | Upstream | -1346 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_517 | ERF12 | Not available | Upstream | -482 |
| | | Upstream | -483 |
Matrix_53 | MYC3 | Not available | Downstream | 2351 |
| | | Upstream | -1348 |
| | | Upstream | -1349 |
Matrix_55 | PIF3 | Not available | Upstream | -1345 |
| | | Upstream | -1346 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Downstream | 2221 |
| | | Upstream | -1347 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Downstream | 2352 |
Matrix_64 | PIF5 | Not available | Upstream | -1347 |
Matrix_7 | PIF4 | Not available | Downstream | 2351 |
| | | Upstream | -1348 |
| | | Upstream | -1349 |
Matrix_72 | CDF2 | Not available | Downstream | 1844 |
Matrix_77 | PRR5 | Not available | Downstream | 2354 |
| | | Upstream | -1345 |
| | | Upstream | -1346 |
Matrix_80 | BIM1 | Not available | Upstream | -1347 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Matrix_91 | CRF3 | Not available | Upstream | -481 |
| | | Upstream | -482 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Downstream | 1641 |
| | | Intron | 909 |
| | | Upstream | -28 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Downstream | 1962 |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | Intron | 854 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Downstream | 2350 |
| | | Downstream | 2221 |
| | | Downstream | 1730 |
Motif_165 | AP3SV40 | AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2 | Downstream | 1725 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -1253 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Downstream | 2351 |
| | | Upstream | -1348 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -493 |
| | | Upstream | -1261 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -486 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Downstream | 1822 |
| | | Upstream | -22 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Downstream | 2351 |
| | | Downstream | 2014 |
| | | Upstream | -1261 |
| | | Upstream | -1348 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -1347 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Downstream | 2352 |
| | | Downstream | 2351 |
| | | Upstream | -1347 |
| | | Upstream | -1348 |
Motif_22 | RYREPEATLEGUMINBOX | RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean | Downstream | 2224 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 1903 |
| | | Upstream | -493 |
| | | Upstream | -1261 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Downstream | 2203 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1346 |
| | | Upstream | -1348 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Downstream | 2354 |
| | | Downstream | 2352 |
| | | Intron | 835 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Downstream | 1822 |
| | | Upstream | -22 |
Motif_261 | S1FBOXSORPS1L21 | S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activity | Downstream | 2242 |
| | | Upstream | -489 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -453 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -1348 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Downstream | 1821 |
| | | Upstream | -23 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 1960 |
| | | Upstream | -1254 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -483 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 1705 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -493 |
| | | Upstream | -1261 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Downstream | 2351 |
| | | Downstream | 2220 |
| | | Upstream | -1348 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 1853 |
Motif_351 | GARE1OSREP1 | Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Downstream | 1903 |
Motif_375 | ERELEE4 | ERE (ethylene responsive element) of tomato E4 and carnation GST1 genes; GST1 is related to senescence; Found in the 5'-LTR region of TLC1.1 retrotransposon family in Lycopersicon chilense; ERE motifs mediate ethylene-induced activation of the U3 promoter region | Downstream | 1622 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Downstream | 2023 |
Motif_388 | CPRFPCCHS;AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | Upstream | -1347 |
Motif_419 | MYB4 binding site motif | Not available | Downstream | 1822 |
| | | Upstream | -22 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Downstream | 1822 |
| | | Upstream | -22 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -1347 |
| | | Upstream | -1348 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Intron | 865 |
Motif_469 | QELEMENTZMZM13 | Q(quantitative)-element in maize ZM13 gene promoter; Found at -107 to -102; Involved in expression enhancing activity; ZM13 is a maize homolog of tomato LAT52 gene; ZM13 is a pollen-specific maize gene | Downstream | 2234 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -1347 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 2353 |
| | | Intron | 834 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -486 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Downstream | 1636 |
| | | Intron | 846 |
| | | Upstream | -72 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Downstream | 1823 |
| | | Upstream | -21 |
Motif_520 | AMYBOX1 | amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley | Downstream | 1903 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -5 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -1349 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -1408 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Downstream | 2219 |
| | | Upstream | -1349 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Downstream | 2023 |
Motif_599 | LREBOXIIPCCHS1;HY5 | BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -1346 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -1358 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Downstream | 1617 |
| | | Downstream | 1616 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1349 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Intron | 861 |
| | | Upstream | -1414 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -1348 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Downstream | 2224 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 2014 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Downstream | 2187 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 2154 |
| | | Downstream | 2153 |
| | | Downstream | 1845 |
| | | Downstream | 1844 |
| | | Downstream | 1629 |
| | | Intron | 940 |
| | | Upstream | -37 |
| | | Upstream | -72 |
| | | Upstream | -1391 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Downstream | 1823 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -1358 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 1844 |
| | | Downstream | 1629 |
| | | Upstream | -37 |
Motif_686 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | Intron | 922 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Upstream | -493 |