Matrix_104 | PI | Not available | Upstream | -681 |
| | | Upstream | -682 |
Matrix_109 | GBF3 | Not available | Upstream | -681 |
| | | Upstream | -682 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Matrix_113 | ABI5 | Not available | Upstream | -681 |
| | | Upstream | -682 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -679 |
| | | Upstream | -680 |
Matrix_120 | BEE2 | Not available | Upstream | -682 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -681 |
| | | Upstream | -682 |
Matrix_129 | ABF1 | Not available | Upstream | -682 |
| | | Upstream | -683 |
Matrix_134 | ABF1 | Not available | Upstream | -683 |
| | | Upstream | -684 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -683 |
| | | Upstream | -684 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -678 |
| | | Upstream | -679 |
Matrix_156 | POC1 | Not available | Upstream | -683 |
| | | Upstream | -684 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -665 |
Matrix_181 | Dof5.7 | Not available | Upstream | -660 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -679 |
| | | Upstream | -680 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -679 |
| | | Upstream | -680 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -682 |
| | | Upstream | -683 |
Matrix_214 | AP1 | Not available | Upstream | -680 |
| | | Upstream | -681 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -683 |
| | | Upstream | -684 |
Matrix_227 | AT1G64620 | Not available | Upstream | -659 |
Matrix_24 | POC1 | Not available | Upstream | -678 |
| | | Upstream | -679 |
Matrix_247 | PIF3 | Not available | Upstream | -682 |
| | | Upstream | -683 |
Matrix_264 | ATAREB1 | Not available | Upstream | -679 |
| | | Upstream | -680 |
| | | Upstream | -682 |
| | | Upstream | -683 |
Matrix_296 | GBF2 | Not available | Upstream | -682 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -682 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Matrix_301 | PIL5 | Not available | Upstream | -677 |
| | | Upstream | -678 |
Matrix_331 | GBF1 | Not available | Upstream | -681 |
| | | Upstream | -682 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Matrix_332 | SPT;ALC | Not available | Upstream | -683 |
| | | Upstream | -684 |
Matrix_338 | AP2 | Not available | Upstream | -679 |
| | | Upstream | -680 |
Matrix_345 | POC1 | Not available | Upstream | -679 |
| | | Upstream | -680 |
Matrix_351 | HAT9;ATHB-4;ATHB2;HAT22;HAT14 | Not available | Intron | 8378 |
Matrix_356 | PRR5 | Not available | Upstream | -675 |
| | | Upstream | -676 |
| | | Upstream | -679 |
| | | Upstream | -680 |
| | | Upstream | -788 |
Matrix_389 | ILR3 | Not available | Upstream | -682 |
| | | Upstream | -683 |
Matrix_403 | BZR1 | Not available | Upstream | -680 |
| | | Upstream | -681 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -680 |
| | | Upstream | -681 |
Matrix_443 | AGL15 | Not available | Upstream | -680 |
| | | Upstream | -681 |
Matrix_466 | PRR5 | Not available | Upstream | -679 |
Matrix_48 | PI | Not available | Upstream | -651 |
Matrix_480 | BES1 | Not available | Upstream | -682 |
| | | Upstream | -683 |
Matrix_488 | ABF1 | Not available | Upstream | -674 |
| | | Upstream | -675 |
| | | Upstream | -681 |
| | | Upstream | -682 |
Matrix_55 | PIF3 | Not available | Upstream | -681 |
| | | Upstream | -682 |
Matrix_7 | PIF4 | Not available | Upstream | -684 |
| | | Upstream | -685 |
Matrix_77 | PRR5 | Not available | Upstream | -680 |
| | | Upstream | -681 |
Matrix_80 | BIM1 | Not available | Upstream | -681 |
| | | Upstream | -682 |
Motif_104 | CAREOSREP1 | CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Upstream | -706 |
Motif_120 | ABRETAEM | ABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGC | Upstream | -681 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -492 |
| | | Upstream | -684 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -39 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -684 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -683 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -492 |
| | | Upstream | -683 |
| | | Upstream | -684 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -788 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -492 |
| | | Upstream | -682 |
| | | Upstream | -684 |
| | | Upstream | -796 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -683 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -684 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -714 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -719 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -492 |
| | | Upstream | -684 |
| | | Upstream | -796 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -684 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -742 |
Motif_483 | ABREMOTIFAOSOSEM | motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption | Upstream | -796 |
Motif_536 | TBOXATGAPB | Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana | Upstream | -557 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -682 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -685 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -682 |
| | | Upstream | -685 |
| | | Upstream | -797 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -986 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -684 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -685 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -682 |
| | | Upstream | -797 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -683 |