View conserved binding sites


Gene
PT05G08320
Description
protein kinase UbiB
Alias
Potri.005G083200;PAC:27030932;Potri.005G083200.1;Potri.005G083200.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-681
Upstream-682
Matrix_109GBF3Not availableUpstream-681
Upstream-682
Upstream-683
Upstream-684
Matrix_113ABI5Not availableUpstream-681
Upstream-682
Upstream-683
Upstream-684
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-679
Upstream-680
Matrix_120BEE2Not availableUpstream-682
Matrix_122ABF1;AREB2Not availableUpstream-681
Upstream-682
Matrix_129ABF1Not availableUpstream-682
Upstream-683
Matrix_134ABF1Not availableUpstream-683
Upstream-684
Matrix_145GBF4;AT5G44080Not availableUpstream-683
Upstream-684
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-678
Upstream-679
Matrix_156POC1Not availableUpstream-683
Upstream-684
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-665
Matrix_181Dof5.7Not availableUpstream-660
Matrix_192FHY3/FAR1Not availableUpstream-679
Upstream-680
Upstream-683
Upstream-684
Matrix_194HYH;HY5Not availableUpstream-679
Upstream-680
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-682
Upstream-683
Matrix_214AP1Not availableUpstream-680
Upstream-681
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-683
Upstream-684
Matrix_227AT1G64620Not availableUpstream-659
Matrix_24POC1Not availableUpstream-678
Upstream-679
Matrix_247PIF3Not availableUpstream-682
Upstream-683
Matrix_264ATAREB1Not availableUpstream-679
Upstream-680
Upstream-682
Upstream-683
Matrix_296GBF2Not availableUpstream-682
Upstream-683
Upstream-684
Matrix_300bZIP68;bZIP16Not availableUpstream-682
Upstream-683
Upstream-684
Matrix_301PIL5Not availableUpstream-677
Upstream-678
Matrix_331GBF1Not availableUpstream-681
Upstream-682
Upstream-683
Upstream-684
Matrix_332SPT;ALCNot availableUpstream-683
Upstream-684
Matrix_338AP2Not availableUpstream-679
Upstream-680
Matrix_345POC1Not availableUpstream-679
Upstream-680
Matrix_351HAT9;ATHB-4;ATHB2;HAT22;HAT14Not availableIntron8378
Matrix_356PRR5Not availableUpstream-675
Upstream-676
Upstream-679
Upstream-680
Upstream-788
Matrix_389ILR3Not availableUpstream-682
Upstream-683
Matrix_403BZR1Not availableUpstream-680
Upstream-681
Matrix_438AtbZIP63Not availableUpstream-680
Upstream-681
Matrix_443AGL15Not availableUpstream-680
Upstream-681
Matrix_466PRR5Not availableUpstream-679
Matrix_48PINot availableUpstream-651
Matrix_480BES1Not availableUpstream-682
Upstream-683
Matrix_488ABF1Not availableUpstream-674
Upstream-675
Upstream-681
Upstream-682
Matrix_55PIF3Not availableUpstream-681
Upstream-682
Matrix_7PIF4Not availableUpstream-684
Upstream-685
Matrix_77PRR5Not availableUpstream-680
Upstream-681
Matrix_80BIM1Not availableUpstream-681
Upstream-682
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-706
Motif_120ABRETAEMABRE (ABA responsive element) found in wheat Em gene; transacting factor: EMBP-1; EMBP-1 binds to CACGTGGCUpstream-681
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-492
Upstream-684
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-39
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-684
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-683
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-492
Upstream-683
Upstream-684
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-788
Motif_244ABRE-like binding site motifNot availableUpstream-492
Upstream-682
Upstream-684
Upstream-796
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-683
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-684
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-714
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-719
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-492
Upstream-684
Upstream-796
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-684
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-742
Motif_483ABREMOTIFAOSOSEMmotif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritptionUpstream-796
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-557
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-682
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-685
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-682
Upstream-685
Upstream-797
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-986
Motif_638ABRE binding site motifNot availableUpstream-684
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-685
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-682
Upstream-797
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-683